View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15004_high_5 (Length: 361)
Name: NF15004_high_5
Description: NF15004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15004_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 58 - 354
Target Start/End: Original strand, 13204736 - 13205038
Alignment:
| Q |
58 |
tataagagaagtgtaatttggtgcaaaacttttctcactaaaaacacgaacacacattttac------actccctatttatggttaatcatattgctatt |
151 |
Q |
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| T |
13204736 |
tataagagaagtgcaatttggtgcgaaatttttctcactaaaaacacgaacacaaattttacctgcaaactccctatttatggttaatcatattgctatt |
13204835 |
T |
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| Q |
152 |
gtgtctccaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatatatttaacacaataagttcattttgtttcatgattattaaggct |
251 |
Q |
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| T |
13204836 |
gtgtctgcaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatgtatttaacacaataagttcactttgtttcatgattattaaggct |
13204935 |
T |
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| Q |
252 |
tgccttcaagtattcaattcaaactaatgatgataggagcaaaaatgttttatatttaatattttgtatatactataggtgttaattcccacatacctat |
351 |
Q |
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| T |
13204936 |
tgccttcaagtattcaattcaaactaatgatgataggagcaaaaatgttttatatttaatattttgtatatactataggtgttaattcccacctacctat |
13205035 |
T |
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| Q |
352 |
gct |
354 |
Q |
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| T |
13205036 |
gct |
13205038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 133 - 330
Target Start/End: Original strand, 13178739 - 13178937
Alignment:
| Q |
133 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaa-ggtgtgttagttttcacctattttatatatttaacacaataagttcatttt |
231 |
Q |
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| T |
13178739 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaaggtgggttacctttcacacattttatgtatttaacataagaagttcaaatt |
13178838 |
T |
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| Q |
232 |
gtttcatgattattaaggcttgccttcaagtattcaattcaaactaatgatgataggagcaaaaatgttttatatttaatattttgtatatactatagg |
330 |
Q |
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| T |
13178839 |
gtttcgtgattattaaggcttgtcctcatgtatgcaattcaaactaatgatgataggagcaaaaaagttttatatttaatattttgaatatactatagg |
13178937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 13203831 - 13203913
Alignment:
| Q |
133 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatatatttaac |
215 |
Q |
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| T |
13203831 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaggtgtgttacctttcacccattctatgtatttaac |
13203913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 9944001 - 9943897
Alignment:
| Q |
153 |
tgtctccaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatatatttaacacaataagttcattttgtttcatgattattaaggctt |
252 |
Q |
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| T |
9944001 |
tgtcttcaaaggaatctactttgaaaaa--tgtgttacttttcgcccattttatgtatttaacctaataagttcactttgtttcatgcttattaaggttt |
9943904 |
T |
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| Q |
253 |
gccttca |
259 |
Q |
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| T |
9943903 |
gacttca |
9943897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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