View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15004_low_1 (Length: 547)
Name: NF15004_low_1
Description: NF15004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15004_low_1 |
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| [»] scaffold0625 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 37482430 - 37482233
Alignment:
| Q |
17 |
acaaagatactacaatcttagatctaagaaatatgcatgttaattt-catagattaacaattgtaatttgaggatataactgatatttttcaatgatcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37482430 |
acaaagatactacaatcttagatctaagaaatatgcatgttaattttcatagattaacaattgtaatttgaggatataactgatatttttcaatgatcaa |
37482331 |
T |
|
| Q |
116 |
gcaagattttttaggataggaggttctgtcctcaatgttattgacacttttaaccatataggattaatttggcatatacgaaaaataacttgacacaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37482330 |
gcaagattttttaggataggaggttctgtcctcaatgttattgacacttttaaccatataggattaatttggcatatacgaaaaataacttgacacaa |
37482233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 37482208 - 37482173
Alignment:
| Q |
206 |
tgacacaataaattaaaataaaagtcctctaatgcc |
241 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
37482208 |
tgacacaataaatttaaataaaagtcctctaatgcc |
37482173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 250 - 400
Target Start/End: Complemental strand, 20487361 - 20487211
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattattttaagtctcattttgatcctttaattaagttccgtcc |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||||| |
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| T |
20487361 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtctcattttggtcctttaattaagatccgtcc |
20487262 |
T |
|
| Q |
350 |
atcgtttatgtcctttccgtcaaacattatttaaaaaacgttaactctcac |
400 |
Q |
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||||||||||||||||||||||||| ||| |||| ||||||||| |||||| |
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| T |
20487261 |
atcgtttatgtcctttccgtcaaactttaattaagaaacgttaagtctcac |
20487211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 250 - 400
Target Start/End: Original strand, 20481642 - 20481792
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattattttaagtctcattttgatcctttaattaagttccgtcc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||||||||| ||||||||||||| | ||||| |
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| T |
20481642 |
ggcttaattatatatctggtcccttaaataattaccaaaattcggtttggtcccttatttaattttagtctcattttggtcctttaattaagattcgtcc |
20481741 |
T |
|
| Q |
350 |
atcgtttatgtcctttccgtcaaacattatttaaaaaacgttaactctcac |
400 |
Q |
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||||||||||||||||||||||||| ||| |||| ||||| ||| |||||| |
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| T |
20481742 |
atcgtttatgtcctttccgtcaaactttaattaagaaacgctaagtctcac |
20481792 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 250 - 400
Target Start/End: Complemental strand, 21967140 - 21966990
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattattttaagtctcattttgatcctttaattaagttccgtcc |
349 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||||| |||||||| ||||||||||||| | ||||| |
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| T |
21967140 |
ggcttaattatatatctggtccctcaaataattaccaatattcattttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtcc |
21967041 |
T |
|
| Q |
350 |
atcgtttatgtcctttccgtcaaacattatttaaaaaacgttaactctcac |
400 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||| |||||| |
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| T |
21967040 |
atcgtttatgtcctttccgtcaaacattaattaagaaacgttaagtctcac |
21966990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 250 - 400
Target Start/End: Complemental strand, 21989576 - 21989426
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattattttaagtctcattttgatcctttaattaagttccgtcc |
349 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||||| |||||||| ||||||||||||| | ||||| |
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| T |
21989576 |
ggcttaattatatatctggtccctcaaataattaccaatattcattttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtcc |
21989477 |
T |
|
| Q |
350 |
atcgtttatgtcctttccgtcaaacattatttaaaaaacgttaactctcac |
400 |
Q |
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|
||||||||||||||||||||||||||||| |||| ||||||||| |||||| |
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| T |
21989476 |
atcgtttatgtcctttccgtcaaacattaattaagaaacgttaagtctcac |
21989426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 250 - 383
Target Start/End: Original strand, 21966568 - 21966701
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattattttaagtctcattttgatcctttaattaagttccgtcc |
349 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||| ||||||||||||| | ||||| |
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|
| T |
21966568 |
ggcttaattatatatttggtcccttaaataattaccaaaattcgttttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtcc |
21966667 |
T |
|
| Q |
350 |
atcgtttatgtcctttccgtcaaacattatttaa |
383 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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| T |
21966668 |
atcgtttatgtcctttccgtcaaacattaattaa |
21966701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 250 - 383
Target Start/End: Original strand, 21989004 - 21989137
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattattttaagtctcattttgatcctttaattaagttccgtcc |
349 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||| ||||||||||||| | ||||| |
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|
| T |
21989004 |
ggcttaattatatatttggtcccttaaataattaccaaaattcgttttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtcc |
21989103 |
T |
|
| Q |
350 |
atcgtttatgtcctttccgtcaaacattatttaa |
383 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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|
| T |
21989104 |
atcgtttatgtcctttccgtcaaacattaattaa |
21989137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 24860326 - 24860203
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattattttaagtctcattttgatcctttaattaagttccgtcc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||||||| |
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|
| T |
24860326 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattatttttagactcattttggtcctttaattaagctccgtcc |
24860227 |
T |
|
| Q |
350 |
atcgtttatgtcctttccgtcaaa |
373 |
Q |
| |
|
|||||||||| ||||||||||||| |
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|
| T |
24860226 |
atcgtttatgccctttccgtcaaa |
24860203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 250 - 400
Target Start/End: Original strand, 24858944 - 24859093
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattattttaagtctcattttgatcctttaattaagttccgtcc |
349 |
Q |
| |
|
||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||| |
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|
| T |
24858944 |
ggcttaattatatatctaggcc-ttaaataattatcaaaattcgttttggtcccttaattatttttaggttcattttggtcctttaattaagctccgtcc |
24859042 |
T |
|
| Q |
350 |
atcgtttatgtcctttccgtcaaacattatttaaaaaacgttaactctcac |
400 |
Q |
| |
|
||||||| ||| |||||||| ||| ||| |||| ||| ||||| |||||| |
|
|
| T |
24859043 |
atcgtttttgttctttccgttaaaaatttattaagaaatgttaagtctcac |
24859093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0625 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 8062 - 8002
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaatta |
310 |
Q |
| |
|
|||||||||| || | |||||||||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
8062 |
ggcttaattacatctttggtcccttaaataattatgaaatttcactttggtcccttaatta |
8002 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 18993635 - 18993695
Alignment:
| Q |
250 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaatta |
310 |
Q |
| |
|
|||||||||| || | |||||||||||||||||| ||| ||| |||||||||||||||| |
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|
| T |
18993635 |
ggcttaattacatctttggtcccttaaataattatgaaatttcactttggtcccttaatta |
18993695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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