View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15004_low_2 (Length: 530)
Name: NF15004_low_2
Description: NF15004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15004_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 47689122 - 47688769
Alignment:
| Q |
19 |
atttaaggatacccctatcgggtataagctttttgttttggtaagggaattgatttactttgggaagattagttttagcttaatcacgaaggatcaagcg |
118 |
Q |
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| T |
47689122 |
atttaaggatacccctatcgggtataagctttttgttttggtaagggaattgatttactttgggaagattagtcttagcttaatcacgaaggatcaagcg |
47689023 |
T |
|
| Q |
119 |
aaaacacataaacaacaaaatttgattagaaagttgccggaaactatttgaaccgcaaatttcaggtgaaaaaagttagtgaaagttgctccctaccaac |
218 |
Q |
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| T |
47689022 |
aaaacacataaacaacaaaatttgattagaaagttgccggaaactatttgaaccgcaaatttcaggtgaaaaaagttagtgaaagttgctccctaccaac |
47688923 |
T |
|
| Q |
219 |
attaggccttagagatatatcgggaaatttcttgtaaggaagaaattaattagataaaaggaaaacatatttgccactcattacatgaggaaaataaatg |
318 |
Q |
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| T |
47688922 |
attaggccttagagatatatcgggaaatttcttgtaaggaagaaattaattagataaaaggaaaatatatttgccactcattacatgaggaaaataaatg |
47688823 |
T |
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| Q |
319 |
agaccaataaaaataattggaataaaactaaacttacatatctaacagtccatc |
372 |
Q |
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| T |
47688822 |
agaccaataaaaataattggaataaaactaaacttacatatctaacagtccatc |
47688769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 363
Target Start/End: Complemental strand, 37417621 - 37417290
Alignment:
| Q |
38 |
gggtataagctttttgttttggtaagggaattgatttactttgggaagattagttttagcttaatcacgaaggatcaagcgaaaacacataaacaacaaa |
137 |
Q |
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| T |
37417621 |
gggtataagctttttgttttggtaagggaattgatttactttgggaagattagttttagcttaatcacgaaggatcaaacgaaaacac--aaacaacaaa |
37417524 |
T |
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| Q |
138 |
atttgattagaaagttgccggaaactatttgaaccgcaaatttcaggtgaaaaaagttagtgaaagttgctccctaccaacattaggcc------ttaga |
231 |
Q |
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| T |
37417523 |
attggattataaagttgctggaaactatttgaaccgcaaatttcaggtcaagaaagttagtgaaagttgctccctgctaacattaggccttagagttaga |
37417424 |
T |
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| Q |
232 |
gatatatcgggaaatttcttgtaaggaagaaattaattagataaaagga----aaacatatttgccactcattacatgaggaaaataaatgagaccaata |
327 |
Q |
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| T |
37417423 |
gatatatcgggaaatttcttgtaaggaagaaattaattagataataggaatatatatatatttgtcactccttacatgag--aaagaaacgagagcaaaa |
37417326 |
T |
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| Q |
328 |
aaaataattggaataaaactaaacttacatatctaa |
363 |
Q |
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| T |
37417325 |
aaataaattggaataatactaaacttacatatctaa |
37417290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 398 - 518
Target Start/End: Complemental strand, 7520176 - 7520056
Alignment:
| Q |
398 |
taattaattaaagtagcgctaacttatgttagttttcacttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7520176 |
taattaattaaagtagcgctaacttatgttagttttcatttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
7520077 |
T |
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| Q |
498 |
tctctctttctccctgcccta |
518 |
Q |
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| T |
7520076 |
tctctctttctccctgcccta |
7520056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 398 - 518
Target Start/End: Complemental strand, 47688539 - 47688419
Alignment:
| Q |
398 |
taattaattaaagtagcgctaacttatgttagttttcacttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47688539 |
taattaattaaagtagcgctaacttatgttagttttcatttatctaatgatttataatacgattattgaagaaatacattaagtttaaagtgttttcttt |
47688440 |
T |
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| Q |
498 |
tctctctttctccctgcccta |
518 |
Q |
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||||||||||||||||||||| |
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| T |
47688439 |
tctctctttctccctgcccta |
47688419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 37417010 - 37416961
Alignment:
| Q |
466 |
aagaaatacattaagtttaaagtgttttcttttctctctttctccctgcc |
515 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
37417010 |
aagaaatacattaagcttaaagtgttttcttttctctctttgtccctgcc |
37416961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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