View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15004_low_4 (Length: 386)
Name: NF15004_low_4
Description: NF15004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15004_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 147 - 370
Target Start/End: Complemental strand, 11329978 - 11329755
Alignment:
| Q |
147 |
taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac |
246 |
Q |
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| T |
11329978 |
taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac |
11329879 |
T |
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| Q |
247 |
taccatgaaaagagagatgctgatgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa |
346 |
Q |
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| T |
11329878 |
taccatgaaaagagagatgatgatgttggcaagcatgctaaggcttcaatactcaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa |
11329779 |
T |
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| Q |
347 |
aagaacatagcttgaagatgaaag |
370 |
Q |
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|||||||||||||||||||||||| |
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| T |
11329778 |
aagaacatagcttgaagatgaaag |
11329755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 147 - 370
Target Start/End: Complemental strand, 11487999 - 11487776
Alignment:
| Q |
147 |
taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac |
246 |
Q |
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| T |
11487999 |
taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac |
11487900 |
T |
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| Q |
247 |
taccatgaaaagagagatgctgatgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa |
346 |
Q |
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| T |
11487899 |
taccatgaaaagagagatgatgatgttggcaagcatgctaaggcttcaatactcaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa |
11487800 |
T |
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| Q |
347 |
aagaacatagcttgaagatgaaag |
370 |
Q |
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| T |
11487799 |
aagaacatagcttgaagatgaaag |
11487776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 352
Target Start/End: Complemental strand, 37380988 - 37380799
Alignment:
| Q |
163 |
gagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaactaccatgaaaagagag |
262 |
Q |
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||||| |||||||| | ||||||||||| | ||||||| |||||||||| ||||| |||||||||||||| | || | |||||||||||||||| |
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| T |
37380988 |
gagaaagataggtcgagggatagaggaagtaggaaggctcacgaggaagattatgaatcaggtaatcttgatgatagagtagattaccatgaaaagagag |
37380889 |
T |
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| Q |
263 |
atgctgatgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaaaagaac |
352 |
Q |
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| T |
37380888 |
atgaggatgttggtaagcatgaaaaggcttcaaaactcaatcaagatgataaagagggggagacttcagcaaacttgtcatcaaaagaac |
37380799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 11330115 - 11330045
Alignment:
| Q |
10 |
gagaagcatagggatagagataagaaggatagggacagtgagaagaaaagggagttggagaaagatagtga |
80 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11330115 |
gagaaacatagggatagagataagaaggatagggacagtgagaagaaaagggagttggagaaagatagtga |
11330045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 11488136 - 11488066
Alignment:
| Q |
10 |
gagaagcatagggatagagataagaaggatagggacagtgagaagaaaagggagttggagaaagatagtga |
80 |
Q |
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| T |
11488136 |
gagaaacatagggatagagataagaaggatagggacagtgagaagaaaagggagttggagaaagatagtga |
11488066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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