View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15004_low_7 (Length: 336)
Name: NF15004_low_7
Description: NF15004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15004_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 3324367 - 3324046
Alignment:
| Q |
18 |
atcatgtatgtcaatataaaagcagtcaaaacatcaataattgataaaagaacaaaa-----------taaagaacagcagaatctaaataataatggat |
106 |
Q |
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| T |
3324367 |
atcatgtacgtcaatataaaagcagtcaaaacatcaataattgataaaagaacaaaaaataaattcaataaagaacagcagaatctaaataataatggat |
3324268 |
T |
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| Q |
107 |
atttggtttttatattggatttaacccatccttacaaaaccggtgtttttaggtgccgggggacactgtttataaactctaatcaggacttatctttatt |
206 |
Q |
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| T |
3324267 |
attaggtttttatattggatttaacccatccttacaaaaccggtgtttttaggtgccgggggacaccgtttctaaactctaatcaggacttgtctttatt |
3324168 |
T |
|
| Q |
207 |
ctatgagggattta-gattttcccaataatggagttatggaaatctctatgaatcaattcccaagtttagcttgggaacaacaactagaagaaatgtagc |
305 |
Q |
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| T |
3324167 |
ctatgtgggatttaggtttttcccaataatggagttatgaaaatctctatgaatgaattccaaagtttagcttgggaacaacaactagaagaaatgaagc |
3324068 |
T |
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| Q |
306 |
tgcagggctttcagagaataat |
327 |
Q |
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| T |
3324067 |
tgcagggctttcataaaataat |
3324046 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 24231902 - 24231858
Alignment:
| Q |
104 |
gatatttggtttttatattggatttaacccatccttacaaaaccg |
148 |
Q |
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| T |
24231902 |
gatattaggattttagattggatctaacccatccttacaaaaccg |
24231858 |
T |
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