View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15004_low_8 (Length: 317)
Name: NF15004_low_8
Description: NF15004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15004_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 20427041 - 20427314
Alignment:
| Q |
18 |
gaaatgtgagttgatcttcagatggttggttttcaaagtgtcaagaagtgctaatccttttcaaatgttttcaattgtcatttttctaagannnnnnnct |
117 |
Q |
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| T |
20427041 |
gaaatgtgagttgatcttcagatggttggttttcaaagtgtcaagaagtgctaatccttttcaaatgttttcaattgtcatttttctaagactcttttct |
20427140 |
T |
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| Q |
118 |
aatgtttggttgaatctgccacaaaaacaggatgtacaaaatggcagcaccagcaggaatattcaccctcttatggatgagggttttccggttcaacaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20427141 |
aatgtttggttgaatctgccacaaaaacaggatgtacaaaatggcagcaccagcaggaatattcaccctcttatggatgagggttttccgattcaacaaa |
20427240 |
T |
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| Q |
218 |
acaatacgattcatcggggaaagaatgttgttgattccatcagcatgaacaagctgtatattgggttctagttt |
291 |
Q |
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| T |
20427241 |
acaatatgattcattggggaaagaatgttgttgattccatcagcatggacaagctgtatactgggttctagttt |
20427314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 3116758 - 3116611
Alignment:
| Q |
130 |
aatctgccacaaaaacaggatgtacaaaatggcagcaccagcaggaatattcaccctcttatggatgagggttttccggttcaacaaaacaatacgattc |
229 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
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| T |
3116758 |
aatctgccacaaaaacgggatgtacaaattggcagcaccagcaggaacattcaccctgttatggatgagggttttccggtt---caaaacaatacaattc |
3116662 |
T |
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| Q |
230 |
atcggggaaagaatgttgttgattccatcagcatgaacaagctgtatattg |
280 |
Q |
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| T |
3116661 |
atcggggaaagaatgttgttgattccatcagcatggacaagctgtatattg |
3116611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 44738314 - 44738244
Alignment:
| Q |
18 |
gaaatgtgagttgatcttcagatggttggttttcaaagtgtcaagaagtgctaatccttttcaaatgtttt |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44738314 |
gaaatgtgagttgatcttcagatggttggttttcaaagtgtcaagaagtgccaatccttttcaaatgtttt |
44738244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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