View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15004_low_9 (Length: 300)

Name: NF15004_low_9
Description: NF15004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15004_low_9
NF15004_low_9
[»] chr2 (3 HSPs)
chr2 (75-167)||(14948701-14948793)
chr2 (1-67)||(14948223-14948289)
chr2 (186-284)||(14948838-14948930)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 14948701 - 14948793
Alignment:
Q  75 ctcagtatgaacaataatagggtggtgatcagactgcacatgcggaaagactttagctatcccatcgtgaaatctcaatctccaactgacatt 167  Q
    ||||||||||||||||||||||||||||||| ||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14948701 ctcagtatgaacaataatagggtggtgatcatactgcacacccgaaaagactttagctatcccatcatgaaatctcaatctccaactgacatt 14948793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 14948223 - 14948289
Alignment:
Q  1 cttttataaattgcatactttcagaaccaaattaaacatcaaactctcaaatatacaaaatcaatct 67  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14948223 cttttataaattgcatactttcagaaccaaattaaatatcaaactctcaaatatacaaaatcaatct 14948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 14948838 - 14948930
Alignment:
Q  186 tccacttaggtcccctccaagtaaacttagtccctgttgtagtaacctccatcaaactacggtcatgtcattgattcgattgttaaaattctgacattt 284  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||     || ||||||||||||||||||||||||||||||    
T  14948838 tccacttaggtcccctccaagtaaacttagt-cctgctgtagtaacttccatcaacctacg-----gtgattgattcgattgttaaaattctgacattt 14948930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University