View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_10 (Length: 356)
Name: NF15005_high_10
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_10 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 51740358 - 51740705
Alignment:
| Q |
9 |
agcaaaggtaggtaattcatgcagtttcatttgtattattaaatgataactcttaatttggttattattgtatatacaggatttaaatgcagaagattgc |
108 |
Q |
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| T |
51740358 |
agcaaaggtaggtaattcatgcagtttcatttgtattattaaatgattactcttaatttggttattattgtatatacaggatttaaatgcagaagattgc |
51740457 |
T |
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| Q |
109 |
aacattgtgctagtagcaatagtacttaacacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccata |
208 |
Q |
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| T |
51740458 |
aacgttgtgctagtagcaatagtacttaacacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccata |
51740557 |
T |
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| Q |
209 |
cagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatactagcaat |
308 |
Q |
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| T |
51740558 |
cagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatactagcaat |
51740657 |
T |
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| Q |
309 |
gcatggatctaaaacatcaccttcaaccacttatttaatgcacctaat |
356 |
Q |
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| T |
51740658 |
gcatggatctaaaacatcaccttcaaccacttatttaatgcacctaat |
51740705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 116 - 356
Target Start/End: Original strand, 10201260 - 10201500
Alignment:
| Q |
116 |
tgctagtagcaatagtacttaacacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccatacagctat |
215 |
Q |
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| T |
10201260 |
tgctagtatcgatagtattaaacacaataatatcaggaataattgtgtcgtttatagcaaagggggaagagaaaatgttttcaaacaaccatacaacaat |
10201359 |
T |
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| Q |
216 |
tgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatactagcaatgcatgga |
315 |
Q |
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| T |
10201360 |
tgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcgatactagccacaatactagcaatacatggc |
10201459 |
T |
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| Q |
316 |
tctaaaacatcaccttcaaccacttatttaatgcacctaat |
356 |
Q |
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| T |
10201460 |
tctaaaacatcaccttccaccacttatttaatgcacttaat |
10201500 |
T |
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