View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15005_high_11 (Length: 352)
Name: NF15005_high_11
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 33806502 - 33806161
Alignment:
| Q |
1 |
gaaatttggttttgcttggtaacgacgacaataatacggtaatttggcaaagttttagttatccaactgatactttaatgccttcacaagatttcaaaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806502 |
gaaatttggttttgcttggtaacgacgacaataatacggtaatttggcaaagttttagttatccaactgatactttaatgccttcacaagatttcaaaga |
33806403 |
T |
|
| Q |
101 |
gggaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806402 |
gggaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
33806303 |
T |
|
| Q |
201 |
cagacttattggactatgcagaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattct |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806302 |
cagacttattggactatgcagaatgataaccgtaaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattct |
33806203 |
T |
|
| Q |
301 |
atgataacaataggtctttgttatagcaattcattttctctg |
342 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
33806202 |
atgataacaataggtctttgttatggaaattcattttctctg |
33806161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 33811802 - 33812143
Alignment:
| Q |
1 |
gaaatttggttttgcttggtaacgacgacaataatacggtaatttggcaaagttttagttatccaactgatactttaatgccttcacaagatttcaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |
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|
| T |
33811802 |
gaaatttggttttgcttggtaaggacgacaataatacggtaatttggcaaagttttagttatccaactgatactttgatgcattcacaggatttcaaaga |
33811901 |
T |
|
| Q |
101 |
gggaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33811902 |
gggaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
33812001 |
T |
|
| Q |
201 |
cagacttattggactatgcagaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattct |
300 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33812002 |
cagacttattggactatgcagaatgataaccgtaaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattct |
33812101 |
T |
|
| Q |
301 |
atgataacaataggtctttgttatagcaattcattttctctg |
342 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
33812102 |
atgataacaataggtctttgttatggaaattcattttctctg |
33812143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 33802020 - 33801679
Alignment:
| Q |
1 |
gaaatttggttttgcttggtaacgacgacaataatacggtaatttggcaaagttttagttatccaactgatactttaatgccttcacaagatttcaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33802020 |
gaaatttggttttgcttggtaacgacgacaataatacggtaatttggcaaagttttagttatccaactgatactttaatgccttcacaagatttcaaaga |
33801921 |
T |
|
| Q |
101 |
gggaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33801920 |
gggaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
33801821 |
T |
|
| Q |
201 |
cagacttattggactatgcagaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||| | ||| || |||||||||| ||||||||| |||| || ||||||||||| |||| |
|
|
| T |
33801820 |
cagacttattggactatgcagaatgataaccgtaaaacgattaacaagaatggtgatgttgtggcttttgcaaatctcagtgataattcttggaggttct |
33801721 |
T |
|
| Q |
301 |
atgataacaataggtctttgttatagcaattcattttctctg |
342 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| |||||| |
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|
| T |
33801720 |
atgataacaataagtctttgttatggcaattcattgtctctg |
33801679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 31027476 - 31027819
Alignment:
| Q |
1 |
gaaatttggttttgcttggtaacgacgacaataatacggtaatttggcaaagttttagttatccaactgatactttaatgccttcacaagatttcaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||| |
|
|
| T |
31027476 |
gaaatttggttttgcttggtaacgacgacaatgatacggtaatttggcaaagttttagttatccaactgatactttgatgccttcgcaggaattcaaaga |
31027575 |
T |
|
| Q |
101 |
gggaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||| |
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|
| T |
31027576 |
gggaatgaaacttaccagtgaacctagtccaaataacttgacctatgttcttgagatcaaatcaggtaatgttattctttcagctggttacaaaactcca |
31027675 |
T |
|
| Q |
201 |
cagacttattggactatgcagaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattct |
300 |
Q |
| |
|
|| || ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||| |
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|
| T |
31027676 |
caaacatattggactatgcagaaggataaccgtaaaataatagataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttct |
31027775 |
T |
|
| Q |
301 |
atgataacaataggtctttgttatagcaattcattttctctgct |
344 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
31027776 |
atgataacaataagtctttgttatggcaattcattttctctgct |
31027819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 3 - 342
Target Start/End: Original strand, 49462448 - 49462784
Alignment:
| Q |
3 |
aatttggttttgcttggtaacgacgacaataatacggtaatttggcaaagttttagttatccaactgatactttaatgccttcacaagatttcaaagagg |
102 |
Q |
| |
|
||||||||||||||||| || || |||| |||||||||||||||||||||| || ||| ||||||||||| |||||| ||| | ||| || || | |
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|
| T |
49462448 |
aatttggttttgcttgggaaggat---aatagtacggtaatttggcaaagttttgattttcctactgatactttgatgcctcaacaggtttttaaggaag |
49462544 |
T |
|
| Q |
103 |
gaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccaca |
202 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||| |||||| |
|
|
| T |
49462545 |
gaatgaagattactagtgaacctagttcaaataatttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccaca |
49462644 |
T |
|
| Q |
203 |
gacttattggactatgcagaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctat |
302 |
Q |
| |
|
| |||||||||||||||| | |||| | | |||| ||||||||||| || |||||||||| | || ||| | || ||||||||||||||||| ||| |
|
|
| T |
49462645 |
ggtttattggactatgcaggaggataacaggaaaaccattgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttat |
49462744 |
T |
|
| Q |
303 |
gataacaataggtctttgttatagcaattcattttctctg |
342 |
Q |
| |
|
||| |||| | ||||||||| | ||||||||||||||||| |
|
|
| T |
49462745 |
gatgacaagaagtctttgttgtggcaattcattttctctg |
49462784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 93 - 249
Target Start/End: Complemental strand, 10071418 - 10071262
Alignment:
| Q |
93 |
ttcaaagagggaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttca |
192 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| | ||||||||| ||||||||||||| |||| ||||||||| ||| | || |||| |||||||| |
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|
| T |
10071418 |
ttcaaagaggtaaagaaacttacaagtgaacctattccaaataactcgacctatgttcttcagataaaatctggtaatgctattgtttctgctggtttgg |
10071319 |
T |
|
| Q |
193 |
aaactccacagacttattggactatgcagaatgatatccgtaaaatcattgataagg |
249 |
Q |
| |
|
||||||||| |||||| | |||||||||||| | || ||| |||| |||||||||| |
|
|
| T |
10071318 |
aaactccactgacttactagactatgcagaagggtaaccgcaaaacaattgataagg |
10071262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 7815187 - 7815117
Alignment:
| Q |
130 |
caaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
200 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| ||||| | ||||||||| |||||||||||||| |
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|
| T |
7815187 |
caaataacttgacctttgttattgagatcaaatctggtaatgttatactttcagcttgtttcaaaactcca |
7815117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 2529715 - 2529639
Alignment:
| Q |
162 |
tctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgatatccgtaaaat |
238 |
Q |
| |
|
|||||| ||||| ||||||| | ||||| || |||||||| |||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
2529715 |
tctggtaatgttcttctttccacaggtttacaatctccacagccttattggtctatgcaaaatgatatccgaaaaat |
2529639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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