View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_12 (Length: 347)
Name: NF15005_high_12
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 45725446 - 45725780
Alignment:
| Q |
11 |
caaagggggcaccagacttctgtactgtttatgtcatatctaaggggaaaatctcttcagttcggaatgcttctcgtgcagcaccacatacctctcctct |
110 |
Q |
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| T |
45725446 |
caaagggggcaccagacttctgtactgtttatgtcatatctaaggggaaaatctcttcagttcggaatgcttctcgtgcagcaccacatacctctcctct |
45725545 |
T |
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| Q |
111 |
tctcaaccatatacataacaatctaactagtgaggatgtaaatcaaactgcacagcagatatgctctagacgtatgaatatgagaggtttgtttgcttat |
210 |
Q |
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| T |
45725546 |
tctcaaccatatacataacaatctaactagtgaggatgtaaatcaaactgcacagcagatatgctctagacgtatgaatatgagaggtttgtttgcttat |
45725645 |
T |
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| Q |
211 |
gtaaattaaaagaactaagctatttacttattgcagttctagattaataataatcatgttttgatcacaatatatatatgtatgtatgcgacagacagga |
310 |
Q |
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| T |
45725646 |
gtaaattaaaagaactaagctatttacttattgcagttctagattaataataatcatgttttgatcaca--atatatatgtatgtatgcgacagacagga |
45725743 |
T |
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| Q |
311 |
cgtcgatgaaacctaacagctggcaggacgaatctat |
347 |
Q |
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| T |
45725744 |
cgtcgatgaaacctaacagctggcaggacgaatctat |
45725780 |
T |
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