View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_16 (Length: 335)
Name: NF15005_high_16
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 15420694 - 15420374
Alignment:
| Q |
2 |
aaaatggatagaagaatgtcggtgttgagctcggaaaataataagtctatgttattaaggagccaaactcaagattttgatcataatagatggttgtttg |
101 |
Q |
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| T |
15420694 |
aaaatggatagaagaatgtcggtgttgagctcggaaaataataagtctatgttattaaggagccaaactcaagattttgatcataatagatggttgtttg |
15420595 |
T |
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| Q |
102 |
agactaaaggaacctatggaattggaaatgctttttggcaagatgatccaaattcttttggagatgaatgtgaaatgagcatgtcagattttatggacaa |
201 |
Q |
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| T |
15420594 |
agactaaaggaacctatggaattggaaatgctttttggcaagatgatccaaattcttttggagatgaatgtgaaatgagcatgtcagattttatggacaa |
15420495 |
T |
|
| Q |
202 |
accttggaaaccattaactagaaaagttcaaattccaggcgctatactcagtccttataggtacctttcttaattatggtatatagtttttgttgcaata |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
15420494 |
accttggaaaccattaactagaaaagttcaaattccaggcgctatactcagtccttataggtacctttcttaattatgctatatagtttttgttacaata |
15420395 |
T |
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| Q |
302 |
tgtataaaggttatatgcctatg |
324 |
Q |
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| T |
15420394 |
--tttaaaggttatatgtctatg |
15420374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 14599210 - 14599147
Alignment:
| Q |
77 |
tttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggc |
140 |
Q |
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| T |
14599210 |
tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggc |
14599147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 14609304 - 14609359
Alignment:
| Q |
77 |
tttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgc |
132 |
Q |
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|||||||| |||| ||||||||||||||| ||||| ||||||||| |||| ||||| |
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| T |
14609304 |
tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgc |
14609359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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