View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_17 (Length: 327)
Name: NF15005_high_17
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_17 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 4709911 - 4709585
Alignment:
| Q |
1 |
gaaggccttgcttagctcatgctttagttcaagcaaatgaaatcaaagttatctaaattcaaaagacataccacaaacaatttgatgcagaaaatataca |
100 |
Q |
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| T |
4709911 |
gaaggccttgcttagctcatgctttagttcaagcaaatgaaatcaaagttatctaaattcaaaagacataccacaaacaatttgatgcagaaaatataca |
4709812 |
T |
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| Q |
101 |
agacaccaggaagagcatataatgagataaaatttggagtttgtgattttgcattacgggaagtattctggcttacagtgaccctgcataagacacagac |
200 |
Q |
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| T |
4709811 |
agacaccaggaagagcatataatgagataaaatttggagtttgtgattttgcattacgggaagtattctggcttacagtgaccctgcataagacacagac |
4709712 |
T |
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| Q |
201 |
attgaaaagtattttttagaaacagaagaactttggagagttgatggtctatttttggggagagattaggttgattgnnnnnnnnagacgggacaacttt |
300 |
Q |
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| T |
4709711 |
attgaaaagtattttttagaaacagaagaactttggagagttgatggtctatttttggggagagattaggttgattgttttttttagacgggacaacttt |
4709612 |
T |
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| Q |
301 |
aaagaaacaagtcaatattttaaaaaa |
327 |
Q |
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| T |
4709611 |
aaagaaacaagtcaatattttaaaaaa |
4709585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 4844311 - 4844248
Alignment:
| Q |
75 |
aaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagataaaatttgga |
138 |
Q |
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| T |
4844311 |
aaacaatttgaggcagaaaatgtagaagacaccaagaagagcatataatgagataaaatttgga |
4844248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 4844673 - 4844636
Alignment:
| Q |
6 |
ccttgcttagctcatgctttagttcaagcaaatgaaat |
43 |
Q |
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| T |
4844673 |
ccttgcttagctcaagctttggttcaagcaaatgaaat |
4844636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 39251241 - 39251162
Alignment:
| Q |
72 |
cacaaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagat-aaaatttggagtttgtgatttt |
150 |
Q |
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| T |
39251241 |
cacagacaatttgatgcagaaaacatacaagacaacaagaagaacatataacgagataaaaacttggagtttgtgatttt |
39251162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 39262318 - 39262221
Alignment:
| Q |
72 |
cacaaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagat--aaaatttggagtttgtgattttgcattacgggaagtatt |
167 |
Q |
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| T |
39262318 |
cacagacaatttgatgaagaaaacatacaagacaacaagaagagcatataacgagataaaaaaattgaagtttgtgattttaccttacgggaggtatt |
39262221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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