View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_18 (Length: 322)
Name: NF15005_high_18
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 319
Target Start/End: Original strand, 2151753 - 2152069
Alignment:
| Q |
3 |
tggaactcattaaccacttaagtccactcactagcttattaaaacattttacaatttatatgaaaatattctcttgcttctagaatatatagacattttc |
102 |
Q |
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| T |
2151753 |
tggaactcattaaccactcaagtccattcactagcttattgaaacattttacaatttagatgaaaatattattttgcttgtagaatatatcgacattttc |
2151852 |
T |
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| Q |
103 |
tgagcttatagagacatgataagtgcttaacttaactgtgtataaaccttaatttgatcgagcatagtaacatcttaatgcaggttaatagctcacctaa |
202 |
Q |
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| T |
2151853 |
tgagcttatagagacatgataagtgcttaacttaactgtgtataaaccttaatttgatcaagcataataacatcttaatgcaggttaatagctcacctaa |
2151952 |
T |
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| Q |
203 |
gttgataatcactggacttgctcttggaggatcaattgcttcactcttcactttattactattagatggatttgactcaagaaagaaaaaacctctttgc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151953 |
gttgataatcactggacttgctcttggaggatcaattgcttcactcttcactttattactattagatggatttgactcaagaaagaaaaaacctctttgc |
2152052 |
T |
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| Q |
303 |
attacctttgcttctcc |
319 |
Q |
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|||||||||| |||||| |
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| T |
2152053 |
attacctttggttctcc |
2152069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 2205858 - 2205903
Alignment:
| Q |
224 |
tcttggaggatcaattgcttcactcttcactttattactattagat |
269 |
Q |
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||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
2205858 |
tcttggaggatcaatagcttcactcttcacaatatcactattagat |
2205903 |
T |
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