View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_19 (Length: 317)
Name: NF15005_high_19
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 43532447 - 43532752
Alignment:
| Q |
1 |
ccgaaatcagcgttgccactattattactgttgatagctataacgaggagctttaatccatagacaagtgaatgatgtccgtgcctagttcagccaccca |
100 |
Q |
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| T |
43532447 |
ccgaaatcagcattgccactattattactgttgatagctataacgaggagctttaatccatagacaagtgaatgatgtccgtgcctagttcagccaccca |
43532546 |
T |
|
| Q |
101 |
ctgcaacgcttcccaaagtcctaacacctcaccaatatctacccaacacaatggcgcaaaccatgctattctagcaaacacataaccccgtcggcatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532547 |
ctgcaacgcttcccaaagtcctaacacctcaccaatatctacccaacacaatggcgcaaaccatgctattctagcaaacacataaccccgtcggcatctc |
43532646 |
T |
|
| Q |
201 |
aaatacaaataccaataccaaccttgttacgagaattagaaaaagaagcgtctacagtacacttgagtctagctagagcgggttgttgccatcgaatcat |
300 |
Q |
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| T |
43532647 |
aaatacaaataccaataccaaccttgttacgagaattagaaaaagaagcgtctacagtacacttgagtctagctagagcgggttgttgccatcgaatcat |
43532746 |
T |
|
| Q |
301 |
gttcat |
306 |
Q |
| |
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|||||| |
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| T |
43532747 |
gttcat |
43532752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 20815125 - 20815045
Alignment:
| Q |
145 |
aacacaatggcgcaaaccatgctattctagcaaacacataaccccgtcggcatctcaaatacaaataccaataccaacctt |
225 |
Q |
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|||||||||| ||||||||| ||||| |||||| ||||||||||| ||| |||||| |||||| |||| ||||||||||| |
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| T |
20815125 |
aacacaatggtgcaaaccatactattttagcaagcacataaccccatcgacatctcgaatacacatactgataccaacctt |
20815045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 11787197 - 11787242
Alignment:
| Q |
90 |
tcagccacccactgcaacgcttcccaaagtcctaacacctcaccaa |
135 |
Q |
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||||||||||||||||||||||| ||||||| |||| ||||||||| |
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| T |
11787197 |
tcagccacccactgcaacgcttcacaaagtcataacgcctcaccaa |
11787242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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