View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_2 (Length: 584)
Name: NF15005_high_2
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 33 - 557
Target Start/End: Original strand, 30000859 - 30001382
Alignment:
| Q |
33 |
agggaaacaagtcaaatcatggttcatcatctatgaggcttttgagttctagttggttgcattcagttgttaataggaagaatcttagttctacatcttt |
132 |
Q |
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| T |
30000859 |
agggaaacaagtcaaatcatggttcatcatctatgaggcttttgagttctagttggttgcattcagttgttaataggaagaatcttagttctacatcttt |
30000958 |
T |
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| Q |
133 |
gaaccaaggaaaagttgagaggatggaagtggaatcatctgatattgtgagaaatgttggtttggatgttgtttcggattcggataggcgtgatacaggt |
232 |
Q |
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| T |
30000959 |
gaaccaaggaaaagttgagaggatggaagtggaatcatctgatattgtgagaaatgttggtttggatgttgtttcggattcggatagacatgatacgggt |
30001058 |
T |
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| Q |
233 |
tgttgtgcaattggttcaagggatcatgaagtggaggaagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcaga |
332 |
Q |
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| T |
30001059 |
tgttgtgcaattggttcaagggatcatgaagtggaggaagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcaga |
30001158 |
T |
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| Q |
333 |
ttgaagctgtgaagcagattagtttggggtcttgtgatcctgataatacaccagctgaaattgtggcatacagatactgggtgagttactttgttcattt |
432 |
Q |
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| T |
30001159 |
ttgaagctgtgaagcagattagtttggggtcttgtgatcctgataatacaccagctgaaattgtggcatacagatactgggtgagttactttgttcattt |
30001258 |
T |
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| Q |
433 |
taagcacattgactttaggttgaggatattggaacttggaagatataagtttcaagtttgattgttatgttattcttaaagaaatatgagtcttttagaa |
532 |
Q |
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| T |
30001259 |
taagcacattgactttaggttgaggatattggaacttggaagatat-agtttcaagtttgattgttatgttattcttaaagaaatatgagtcttttagaa |
30001357 |
T |
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| Q |
533 |
gtttgtggagaatttcagatgtgtt |
557 |
Q |
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| T |
30001358 |
gtttgcggagaatttcagatgtgtt |
30001382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 246 - 414
Target Start/End: Original strand, 45199193 - 45199361
Alignment:
| Q |
246 |
gttcaagggatcatgaagtggaggaagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaa |
345 |
Q |
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| T |
45199193 |
gttcaagggatcctgaagtggaagaagaatatcaaattcagcttgctttagagctgagtgcaaaggaggatcccgaggctgtacagattgaagctgttaa |
45199292 |
T |
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| Q |
346 |
gcagattagtttggggtcttgtgatcctgataatacaccagctgaaattgtggcatacagatactgggt |
414 |
Q |
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| T |
45199293 |
gcaaatcagtttgggatcttgtcaccctgataatacaccagctgaagttgtcgcataccgatactgggt |
45199361 |
T |
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