View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15005_high_20 (Length: 311)
Name: NF15005_high_20
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_20 |
 | |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (18 HSPs) |
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| [»] chr3 (3 HSPs) |
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|
| [»] chr4 (3 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 7580668 - 7580968
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7580668 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
7580767 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7580768 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
7580867 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgcaag |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7580868 |
gtattctcggtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgcaag |
7580967 |
T |
|
| Q |
311 |
a |
311 |
Q |
| |
|
| |
|
|
| T |
7580968 |
a |
7580968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 7100578 - 7100278
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||| ||||| || |
|
|
| T |
7100578 |
caaagatgtttggacgagaagatgataaagagaagattgttgagtttcttctcacccaagcaaaggactctgacttcctatccgtctatcccattgtcgg |
7100479 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7100478 |
tttaggtggtgttggaaaaacaactctttctcaattggtttacaatgatgatagggtgagtgacaatttcaaaacaaaaatttgggtttgtgtttcagag |
7100379 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgcaag |
310 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||| |
|
|
| T |
7100378 |
gttttctcagtcaaggggattttgtgttccattatagaatccatgacaaaacaaaagtgtgattcaatggagttagatgtaatacaaagaaaagtgcaag |
7100279 |
T |
|
| Q |
311 |
a |
311 |
Q |
| |
|
| |
|
|
| T |
7100278 |
a |
7100278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 40 - 311
Target Start/End: Complemental strand, 17984026 - 17983755
Alignment:
| Q |
40 |
gagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtggtgttggaaaaacaactcttg |
139 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17984026 |
gagaagattgttgagtttcttctcacccaagcgaggttctctgacttcctttccgtctatcccattgttgggttaggtggtgttggaaaaacaactcttg |
17983927 |
T |
|
| Q |
140 |
ctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtattctcagtcaaggggattttgtgttc |
239 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | | |||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
17983926 |
ctcaattggtctacaacgatgataacgtgagtgaaattttcaaaacaaaaatttgggtttgggtttcaaaggttttctcagtcaagggaattttgtgttc |
17983827 |
T |
|
| Q |
240 |
cattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgcaaga |
311 |
Q |
| |
|
| ||||||||||||||||| |||| || | ||||| ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
17983826 |
cgttatagaatccatgacagaacaaaaatttgatgaaataggtttagaggtaatacaaagaaaggtgcaaga |
17983755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 30207671 - 30207382
Alignment:
| Q |
19 |
tttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtg |
118 |
Q |
| |
|
||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30207671 |
tttgggcgagaagatgataaagagaagattatcgagtttcttctcacccaagcgagggactccgacttcctttccgtctatcccattgttggtttaggtg |
30207572 |
T |
|
| Q |
119 |
gtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtattctc |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||| || |||||||| |||||||||||||| ||| ||||| |
|
|
| T |
30207571 |
gtgttggaaaaacaactcttgttcaattggtctacaatgatgctagggtgagtagcaattttaatacaaaaatatgggtttgtgtttccgagactttctc |
30207472 |
T |
|
| Q |
219 |
agtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgca |
308 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| || |||| | |||||| ||| | | ||||||||||||||||||||||||||| |
|
|
| T |
30207471 |
ggtcaagaggattttgtgctccattatagaatctatcacaagagagaagtatgacggcttcaatttagatgtaatacaaagaaaggtgca |
30207382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 30061529 - 30061270
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
30061529 |
caaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttgg |
30061430 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||| ||||||||||||||||||||| ||| |
|
|
| T |
30061429 |
tttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgaaaaaaaaatttgggtttgtgtttctgag |
30061330 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgt |
270 |
Q |
| |
|
||||| || ||| ||||||||||||| ||||||||||| || ||| |||||||||| |
|
|
| T |
30061329 |
actttctcggtaaagaggattttgtgttctattatagaatctatcacattacagaagtgt |
30061270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 29873323 - 29873031
Alignment:
| Q |
19 |
tttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtg |
118 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29873323 |
tttggacgagaagatgataaagaaaagattgttgagtttcttctcacccaagcgagggactctgacttcctttccgtctatcccattgttggtttaggtg |
29873224 |
T |
|
| Q |
119 |
gtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtattctc |
218 |
Q |
| |
|
|| |||||||||||||||| | ||||||||||||||| |||| |||||||||| |||||| | | ||| ||||||||||||||||| ||| ||||| |
|
|
| T |
29873223 |
gtattggaaaaacaactctcgttcaattggtctacaatgatgttagggtgagtggcaattttgacaaaaatatttgggtttgtgtttctgagactttctc |
29873124 |
T |
|
| Q |
219 |
agtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgcaaga |
311 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| || |||| | ||||||||| || | | ||||||||||| |||||||||||||||| |
|
|
| T |
29873123 |
tgtcaagaggatttgttgttccattatagaatctatcacaagagagaagtgtgctgacttcgaattagatgtaatggaaagaaaggtgcaaga |
29873031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 30337474 - 30337714
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || ||||| |
|
|
| T |
30337474 |
caaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgaaggactctgacttcctttccgtctatcccatagttgg |
30337573 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||| ||||||||||||||||||||| ||| |
|
|
| T |
30337574 |
tttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgaaaaaaaaatttgggtttgtgtttctgag |
30337673 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttccattatagaatc |
251 |
Q |
| |
|
||||| || ||| ||||||||||||| ||||||||||| |
|
|
| T |
30337674 |
actttctcggtaaagaggattttgtgttctattatagaatc |
30337714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 30750803 - 30750563
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
30750803 |
caaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttgg |
30750704 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||| ||| ||||||||||||||||||||| ||| |
|
|
| T |
30750703 |
tttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgacaattttgaaaaaaaaatttgggtttgtgtttctgag |
30750604 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttccattatagaatc |
251 |
Q |
| |
|
||||| || ||| ||||||||||||| ||||||||||| |
|
|
| T |
30750603 |
actttctcggtaaagaggattttgtgttctattatagaatc |
30750563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 29854468 - 29854211
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||| |
|
|
| T |
29854468 |
caaaagtgtttggacgagaagatgataaagaaaagattgttgagtttcttctcacccaaacgagggactcagacttcctttccgtctatcccatttttgg |
29854369 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||| | | ||||||||||||||| ||||| || |
|
|
| T |
29854368 |
tttaggtggtgttggaaaaacaactcttcttcaattggtctacaatgatgttagggtgagtggcaattttgataaaaaaatttgggtttgcgtttctgaa |
29854269 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttccattatagaatccatgacaaaacagaagt |
268 |
Q |
| |
|
|||||||||||| | ||||||||||| ||| ||||||| || |||| | |||||| |
|
|
| T |
29854268 |
actttctcagtcaagagaattttgtgttctattgtagaatctatcacaagagagaagt |
29854211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 30401226 - 30400931
Alignment:
| Q |
16 |
gtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttag |
115 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
30401226 |
gtgtttggacgaaaagatgataaagaaaagatttttgagtttcttctcacccatgcgagggactctgacttcctttccgtctaccccattgttggtttag |
30401127 |
T |
|
| Q |
116 |
gtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtatt |
215 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||||||||||| |||| ||||||||| || |||| | | || | ||||||||||||||| ||| || |
|
|
| T |
30401126 |
gtggtattggtaaaacaactcttgttcaattggtctacaatgatgttagggtgagggactattttgacataagatcttgggtttgtgtttccgagacttt |
30401027 |
T |
|
| Q |
216 |
ctcagtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgcaaga |
311 |
Q |
| |
|
||| |||||| ||||||||||||| |||||||||| || ||| | ||| |||||||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
30401026 |
ctctgtcaagaggattttgtgttctattatagaatatattacaggagagatatgtgatgccttggattcagatgtaatacaaagaaaggtgcaaga |
30400931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 30476527 - 30476241
Alignment:
| Q |
16 |
gtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttag |
115 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| | || |||||||| ||| ||||||| |||||||| ||| |
|
|
| T |
30476527 |
gtgtttggacgagtagatgatagagagaggattgtcgagtttcttctcacccaagcgcaagtatctgacttcctatccatctatcctattgttggcctag |
30476428 |
T |
|
| Q |
116 |
gtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtatt |
215 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||||| ||| ||||||| ||| |||||| || |||||| ||||| |||||||||| ||| || |
|
|
| T |
30476427 |
gtggtgttggtaaaacaacacttgctcaaatggtctacaatgatcatagggtaagtagcaattttaatacaaaagtttggatttgtgtttcggagacttt |
30476328 |
T |
|
| Q |
216 |
ctcagtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaa |
302 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||| || |||||| | |||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
30476327 |
ctctgtcaaaaggattttgtgttccattatagaatctatcacaaaagacaagtttgatgccttggatttagatgtaatacaaagaaa |
30476241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 17417542 - 17417782
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||| ||||||||||||||| ||||||||||| ||||| | || ||||||| |||||||| || ||||| |
|
|
| T |
17417542 |
caaaggtgtttggacgggaagatgatacaaagaagattgttgagtttctgctcacccaagcaagggattgtgaaatcctttcagtctatcccatagttgg |
17417641 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||||||||| |||| |||||||||| |||||| || |||||||||||| |||||||||| || |
|
|
| T |
17417642 |
gttaggtggtattggtaaaacaactctagctcaattggtctacaatgatgttagggtgagtagcaattttaatacaaaaatttggatttgtgtttctgat |
17417741 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttccattatagaatc |
251 |
Q |
| |
|
| |||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
17417742 |
gctttctcaatcaagaggattttgtgttccatcatagaatc |
17417782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 30436970 - 30436671
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
|||| ||||| ||| |||| ||||||||||| | |||||| |||||||||| |||| |||| |||||| ||||| |||| |||||||| ||||||| |
|
|
| T |
30436970 |
caaaagtgttaggaagagacgatgataaagaaaagattgtccagtttcttcttacccttgcgaaggactctgactttatttctgtctatcccgttgttgg |
30436871 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| ||||||| |||| ||||||||||| |||||| | | ||||||||||||||||||||| ||| |
|
|
| T |
30436870 |
tttaggtggtattggaaaaacaactcttgttcaattgatctacaatgatgttagggtgagtcgcaattttgataaaaaaatttgggtttgtgtttctgag |
30436771 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgcaag |
310 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||| || |||| | ||||||||| || | | |||||||||||| ||||||||||||||| |
|
|
| T |
30436770 |
actttctcggtcaaaaggattttgtgttctattatagaatctatcacaagagagaagtgtgctgactttgatttagatgtaatggaaagaaaggtgcaag |
30436671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 30712398 - 30712617
Alignment:
| Q |
32 |
atgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtggtgttggaaaaac |
131 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||| |||| |||||| |||||| |||| |||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
30712398 |
atgataaagaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggtttaggtggtattggaaaaac |
30712497 |
T |
|
| Q |
132 |
aactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtattctcagtcaaggggatt |
231 |
Q |
| |
|
|||||||| ||||||| ||||||| |||| ||||||||||| |||||| | | |||| |||||||||||||||| ||| ||||| |||||| ||||| |
|
|
| T |
30712498 |
aactcttgttcaattgatctacaatgatgttagggtgagtcgcaattttgataaaaaattttgggtttgtgtttctgagactttctcggtcaagaggatt |
30712597 |
T |
|
| Q |
232 |
ttgtgttccattatagaatc |
251 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
30712598 |
ttgtgttgtattatagaatc |
30712617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 30484543 - 30484318
Alignment:
| Q |
26 |
gagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtggtgttgg |
125 |
Q |
| |
|
|||| ||||||||||| | |||||| ||||||||||||||| | |||| |||||| ||||| |||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
30484543 |
gagacgatgataaagaaaagattgtcgagtttcttctcacctatgcgaaggactctaacttcatttctgtctatcccattgttggtttaggtggtattgg |
30484444 |
T |
|
| Q |
126 |
aaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtattctcagtcaag |
225 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||| ||||||||||| |||||| | | ||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
30484443 |
aaaaacaactcttgttcaattgatctacaatgatgttagggtgagtcgcaattttgataaaaaaatttgggtttgtgtttctgagactttctcggtcaag |
30484344 |
T |
|
| Q |
226 |
gggattttgtgttccattatagaatc |
251 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
30484343 |
aggattttgtgttgtattatagaatc |
30484318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 30676237 - 30676465
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
|||| |||||||||||||||| |||| |||| | |||||| ||||||||||||||||| |||| |||||| |||||| |||| |||||||| ||| |||| |
|
|
| T |
30676237 |
caaaagtgtttggacgagaagttgatcaagaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccatttttgg |
30676336 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| ||| ||| |||| |||||||||| | |||| | | |||| |||||||||||||||| ||| |
|
|
| T |
30676337 |
tttaggtggtattggaaaaacaactcttgttcaattgatcttcaatgatgttagggtgagtggccattttgataaaaaagtttgggtttgtgtttctgag |
30676436 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttc |
239 |
Q |
| |
|
||||| |||||| ||||||||||||| |
|
|
| T |
30676437 |
actttctcggtcaagaggattttgtgttc |
30676465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 30520588 - 30520774
Alignment:
| Q |
25 |
cgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtggtgttg |
124 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| | || ||| ||| |||||||| |||||||||||||||| ||||||||| ||| |
|
|
| T |
30520588 |
cgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaaagggctctgacctcctttccatctatccaattgttggcttaggtggtattg |
30520687 |
T |
|
| Q |
125 |
gaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagagg |
211 |
Q |
| |
|
| |||||||||||||||||||| || || || ||| | |||||||| ||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
30520688 |
ggaaaacaactcttgctcaattagtttataatgatcaccgggtgagtgacaattttgatacaaaaatttgggtttgtgtttctgagg |
30520774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 30560928 - 30561114
Alignment:
| Q |
25 |
cgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtggtgttg |
124 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| | || ||| ||| |||||||| |||||||||||||||| ||||||||| ||| |
|
|
| T |
30560928 |
cgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaaagggctctgacctcctttccatctatccaattgttggcttaggtggtattg |
30561027 |
T |
|
| Q |
125 |
gaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagagg |
211 |
Q |
| |
|
| |||||||||||||||||||| || || || ||| | |||||||| ||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
30561028 |
ggaaaacaactcttgctcaattagtttataatgatcaccgggtgagtgacaattttgatacaaaaatttgggtttgtgtttctgagg |
30561114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 30241330 - 30241565
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
|||| ||||||||||||||||| |||||| ||| |||| | ||||||||||||||||||| | |||||| |||||||||||| ||||||| || |||| |
|
|
| T |
30241330 |
caaaagtgtttggacgagaagacgataaaaagaagattatccagtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgg |
30241429 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagag |
210 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||| ||||||||| |||| || |||||| |||||| || || ||| |||||||||||||||| ||| |
|
|
| T |
30241430 |
gttaggtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgag |
30241529 |
T |
|
| Q |
211 |
gtattctcagtcaaggggattttgtgttccattata |
246 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |
|
|
| T |
30241530 |
aatttctctgtcaacaggattttgtgttccattata |
30241565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 30330200 - 30330350
Alignment:
| Q |
53 |
agtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtggtgttggaaaaacaactcttgctcaattggtcta |
152 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||| ||||||| || ||||||||||| ||| |||||||||||||| ||| || |||| || | |
|
|
| T |
30330200 |
agtttcttctcacccaagcgagggacactgacttcctttccatctatcccatagttggtttaggaggtattggaaaaacaactattgttcgattgatcca |
30330299 |
T |
|
| Q |
153 |
caacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgt |
203 |
Q |
| |
|
| | ||| |||||||||| ||||| || | || ||||||||||||||| |
|
|
| T |
30330300 |
cgatgatattagggtgagtggaaattttaatataataatttgggtttgtgt |
30330350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 25292904 - 25293196
Alignment:
| Q |
19 |
tttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtg |
118 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||||||||||| |||||||| |||||||| ||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
25292904 |
tttggacgagaagatgataaagagaagactgtcgagtttcttcttacccaagcaagggactctgacttcctttccgtccatcccattgttggtttaggtg |
25293003 |
T |
|
| Q |
119 |
gtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtattctc |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||| |||||||||| || ||| || ||||||||||||||||||||||| ||| ||||| |
|
|
| T |
25293004 |
gtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtagcacttttaatacaaaaatttgggtttgtgtttctgagactttctc |
25293103 |
T |
|
| Q |
219 |
agtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgcaaga |
311 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || || | | ||||||||||||| | | ||||||||||||||||||||||||| |||| |
|
|
| T |
25293104 |
ggtcaagaggattttgtgttccattatagaatctatcactagagagaagtgtgatgcctttgatttagatgtaatacaaagaaaggtgtaaga |
25293196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 38939073 - 38939140
Alignment:
| Q |
94 |
gtctatccaattgttggtttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatga |
161 |
Q |
| |
|
|||||| | ||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
38939073 |
gtctattccattgttggtctaggtggatatggaaaaacaacacttgctcaattggtctacaacaatga |
38939140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 7053009 - 7053047
Alignment:
| Q |
123 |
tggaaaaacaactcttgctcaattggtctacaacgatga |
161 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
7053009 |
tggaaaaacaacacttgctcaattggtctataacgatga |
7053047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 13617756 - 13617454
Alignment:
| Q |
11 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
110 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| ||||||| ||||| ||||||||||| ||||| ||| ||||| ||||| | |||||| |||||||| |
|
|
| T |
13617756 |
caaaggtgtttggacgataagataataaagagaagattgttaggtttcatctcacccaagtgagggcctctgactttctttctgactatcccattgttgg |
13617657 |
T |
|
| Q |
111 |
tttaggtggtgttggaaaaacaa--ctcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcag |
208 |
Q |
| |
|
|||||||||||||| ||||| || ||| ||||||| | ||||| || ||||||| |||| || ||||||||||||||||||||||||| ||| ||| || |
|
|
| T |
13617656 |
tttaggtggtgttgcaaaaaaaaaactcctgctcaaattgtctaaaatgatgataaggtgggtgacaatttcaaaacaaaaatttgggtatgtattttag |
13617557 |
T |
|
| Q |
209 |
aggtattctcagtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaaaggtgca |
308 |
Q |
| |
|
|||| |||||| || || | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13617556 |
aggttttctcaatctagagaattttgctttccattatagaatccatgacaaaacagaagtgtgatgcaacatatttagatgtaatacaaagaaaggtgca |
13617457 |
T |
|
| Q |
309 |
aga |
311 |
Q |
| |
|
||| |
|
|
| T |
13617456 |
aga |
13617454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 52353108 - 52352826
Alignment:
| Q |
19 |
tttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtg |
118 |
Q |
| |
|
|||||||| |||| |||||||||| ||||| ||||||||||||||||||||||| | | ||||||||| || ||||| |||||||||||||||| |
|
|
| T |
52353108 |
tttggacggaaagaagataaagagaagattgccgagtttcttctcacccaagcgagtaagtttgacttccttgttgtgtatcctattgttggtttaggtg |
52353009 |
T |
|
| Q |
119 |
gtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtattctc |
218 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| |||| ||| |||||| | || || | | ||||||||||||||||||||| |||| ||||| |
|
|
| T |
52353008 |
gtgttggtaaaacaactcttgttcaattggtctacaatgatgttagagtgagtaaaaaatttcatagaaaaatttgggtttgtgtttctgaggatttctc |
52352909 |
T |
|
| Q |
219 |
agtcaaggggattttgtgttccattatagaatccatgacaaaacagaagtgtgatgcaatgggtttagatgtaatacaaagaa |
301 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||| | | |||||||||| | | ||||||||| |||||||||| |
|
|
| T |
52352908 |
tgtcaataggattttgtgttccattatagaatctattacaagagaaaagtgtgatggcttagatttagatgtgatacaaagaa |
52352826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 20295546 - 20295771
Alignment:
| Q |
26 |
gagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtggtgttgg |
125 |
Q |
| |
|
|||| ||||||||| | | |||||| ||||||||||||||||| |||| |||||| |||||| |||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
20295546 |
gagacgatgataaaaaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggtttaggtggtattgg |
20295645 |
T |
|
| Q |
126 |
aaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtattctcagtcaag |
225 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||||| | |||||| |||||| | | || |||||||||||||||||| ||| ||||| || || |
|
|
| T |
20295646 |
aaaaacaactcttgttcaattagtctacaatgatgatcgcgtgagtggcaattttgataaaagaatttgggtttgtgtttctgagactttctccttcgag |
20295745 |
T |
|
| Q |
226 |
gggattttgtgttccattatagaatc |
251 |
Q |
| |
|
|||||||| |||| ||||||||||| |
|
|
| T |
20295746 |
aggattttgcgttctattatagaatc |
20295771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 26708474 - 26708249
Alignment:
| Q |
26 |
gagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttaggtggtgttgg |
125 |
Q |
| |
|
|||| ||||||||||| | |||||| ||||||||||||||||| |||| |||||| |||||| |||| |||||||| |||||||| ||||||||| |||| |
|
|
| T |
26708474 |
gagacgatgataaagaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggcttaggtggtattgg |
26708375 |
T |
|
| Q |
126 |
aaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtattctcagtcaag |
225 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||| |||||||||| ||||||| | | ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
26708374 |
aaaaacaactcttgttcagttgatctacaacgatgttagggtgagtgacaattttgataaaaaaatttgggtttgtgtttctgagactttctcagtcaag |
26708275 |
T |
|
| Q |
226 |
gggattttgtgttccattatagaatc |
251 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
26708274 |
aggattttgtgttctattatagaatc |
26708249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 13378538 - 13378471
Alignment:
| Q |
94 |
gtctatccaattgttggtttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatga |
161 |
Q |
| |
|
|||||| | |||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
13378538 |
gtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtgtacaacgatga |
13378471 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 9591 - 9527
Alignment:
| Q |
94 |
gtctatccaattgttggtttaggtggtgttggaaaaacaactcttgctcaattggtctacaacga |
158 |
Q |
| |
|
|||||| | |||||||| ||||||| |||||||||||| |||||||||||||| |||||||| |
|
|
| T |
9591 |
gtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtttacaacga |
9527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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