View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_22 (Length: 301)
Name: NF15005_high_22
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 1680405 - 1680695
Alignment:
| Q |
1 |
aaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680405 |
aaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcc |
1680504 |
T |
|
| Q |
101 |
tcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgactaacttccatag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1680505 |
tcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcatcatttgactaacttccatag |
1680604 |
T |
|
| Q |
201 |
caagaagagccaaactcagccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaacacctctctctg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680605 |
caagaagagccaaactcagccaaccattgctcgatattacatccaccaatgcctgaagcagtttatttgcagaaagcaacacctctctctg |
1680695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 2800323 - 2800033
Alignment:
| Q |
1 |
aaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800323 |
aaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcc |
2800224 |
T |
|
| Q |
101 |
tcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgactaacttccatag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2800223 |
tcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaacatttgactaacttccatag |
2800124 |
T |
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| Q |
201 |
caagaagagccaaactcagccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaacacctctctctg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800123 |
caagaagagccaaactcagccaaccattgctcgatattacatccaccaatgcctgaagcagtttatttgcagaaagcaacacctctctctg |
2800033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 40469833 - 40469599
Alignment:
| Q |
12 |
aatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttctt |
111 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||||||||||||| | |
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| T |
40469833 |
aatttggcatgtttaacaattcacgcctcgcaacatcttccatctccaataaatcaaagatggcttctatactcgtccatgagttctcctcgcatttcct |
40469734 |
T |
|
| Q |
112 |
agccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgactaacttccatagcaagaagagcc |
211 |
Q |
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| ||||||| |||||||| ||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
40469733 |
acccaaatcttttgtgaagtgaggaagtcgtagctgcatagagtcgcatccccacaatccttgtgtcaccatttgactaacttcc--aacaagaagagcc |
40469636 |
T |
|
| Q |
212 |
aaactcagccaaccattgctcgatattacatccacca |
248 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||| |
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| T |
40469635 |
aaactcaggcaaccattgcttgatattacatccacca |
40469599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 29269481 - 29269209
Alignment:
| Q |
19 |
catgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaa |
118 |
Q |
| |
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|||||| |||||||| || || || |||||||||||| ||||||||||| | |||||||||||| ||||||||||||||| |||||||||||| ||| |
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| T |
29269481 |
catgttcaacaattcccgtctctcatcatcttccatctctaataaatcaaataccgtttctatactcctccctgggttctcctggcatttcttagctaaa |
29269382 |
T |
|
| Q |
119 |
tcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgactaacttccatagcaagaagagccaaactca |
218 |
Q |
| |
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||||||||||| || ||||| |||||||||||||| || || |||||| |||||| || |||||||| || || ||||| ||||||||||||| |||| |
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| T |
29269381 |
tcctttgtgaagtgtggaagctgtagcagcatagaatctcgctcccacattccttgggttaccatttggcttacctccatggcaagaagagccatgctca |
29269282 |
T |
|
| Q |
219 |
gccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaacacctctctctg |
291 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||| || || | ||||||||||||| ||||| ||||| |
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| T |
29269281 |
gccaaccgttgctcgatattacatcaaccattgcctgcagaagcctgtttgcagaaagcagtacctccctctg |
29269209 |
T |
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