View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15005_high_3 (Length: 488)
Name: NF15005_high_3
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 136 - 460
Target Start/End: Complemental strand, 30059494 - 30059170
Alignment:
| Q |
136 |
gataacttgaaccaaacacctattgaaacatcactcgtttctctatcaataacactgcaaattggactatcatttgaggtagtactgtccttaacgattc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30059494 |
gataacttgaaccaaacacctattgaaacatcactcgtttctctatcaataacactgcaaattggactatcatttgaggtagtactgtccttaacgattc |
30059395 |
T |
|
| Q |
236 |
caattctcttgtacacaagaatctttctaacagagacaacaaagagaaacaacagaacaagagtcaagttcacgcatattgctgcaagttccaatacaga |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30059394 |
caattctcttgtacacaagaatctttctaacagagacaacaaagagaaacaacagaacaagagtcaagttcacgcatattgctgcaagttccaatacaga |
30059295 |
T |
|
| Q |
336 |
caatcccagaatcgtgctggaaagaatatggaacgatcctgaagattcagaagttgataaagctgaaattttgtcgagaaattgggcaatacccattact |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30059294 |
caatcccagaatcgtgctggaaagaatatgcaacgatcctgaagattcagaagttgataaagctgaaattttttcgagaaattgggcaatacccattact |
30059195 |
T |
|
| Q |
436 |
gaatactgtctattgatgaagatgg |
460 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
30059194 |
gaatactgtctatagatgaagatgg |
30059170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 30059617 - 30059552
Alignment:
| Q |
13 |
agaacctgtgaagctggcacagaaataagtgaccagtgtagaacctcaccccaaatgatagcacct |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30059617 |
agaacctgtgaagctggcacagaaataagtgaccagtgtagaacctcaccccaaatgatagcacct |
30059552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University