View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_6 (Length: 436)
Name: NF15005_high_6
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 32244238 - 32244627
Alignment:
| Q |
14 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
32244238 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgca |
32244336 |
T |
|
| Q |
114 |
tgcctataaattcttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatc |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244337 |
tgcctatgaattcttaatttcctacacatcacattaagatat--atgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatc |
32244434 |
T |
|
| Q |
214 |
atgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttcttttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244435 |
atgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttcttttt |
32244534 |
T |
|
| Q |
314 |
cactctactttattcatttacagttttcattaagccataacagtgttgctcagactcaaatatatagatgtatggagtaattaaagtagaaat |
406 |
Q |
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|||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
32244535 |
cactttacttaattcatttacagttttcattaagcagtaacagtgttgctcagactcaaatatatagatgtatgtagtgattaaagtagaaat |
32244627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 32249947 - 32250336
Alignment:
| Q |
14 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
32249947 |
agaacctgtggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgca |
32250045 |
T |
|
| Q |
114 |
tgcctataaattcttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatc |
213 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||| |
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| T |
32250046 |
tgcctatgaattcttaatttcctacacatcacattatgatagatatgtgca--gagacatcacagagggtatatttgttgctatcttcacatatggaatc |
32250143 |
T |
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| Q |
214 |
atgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttcttttt |
313 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250144 |
ctgactgcagttaaatgaatgagaacaaatatatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttcttttt |
32250243 |
T |
|
| Q |
314 |
cactctactttattcatttacagttttcattaagccataacagtgttgctcagactcaaatatatagatgtatggagtaattaaagtagaaat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250244 |
cactctactttattcatttacagttttcattaagccgtaacagtgttgctcagactcaaatatatagatgtatggagtaattaaagtagaaat |
32250336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 32254767 - 32254912
Alignment:
| Q |
14 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
32254767 |
agaacctgtggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgctaagttcatgacattcttcaccatgca |
32254866 |
T |
|
| Q |
114 |
tgcctataaattcttaatttcctacacatcacattaagatatatat |
159 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
32254867 |
tgcctatgaattcttaatttcctacacatcacattattatatatat |
32254912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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