View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15005_high_9 (Length: 360)
Name: NF15005_high_9
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 29570779 - 29570550
Alignment:
| Q |
1 |
ttaacaaccctgcatgaattcatatcaatttttagaccaaggtcaaagtattgaaaactttatactaaccacttcaattaaaaatgcaaacnnnnnnnnn |
100 |
Q |
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| T |
29570779 |
ttaacaaccctgcatgaattcatatcaatttttagaccaaggtcaaagtattgaaaactttatactaaccacttcaattaaaaatgcaaacttttttttt |
29570680 |
T |
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| Q |
101 |
-actttaccatttcaccaaaataatgaagttaaagaaacatatacaagctcaaatatttcatacttgctcataatcaaaatgcataattaaaaatatttc |
199 |
Q |
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| T |
29570679 |
tactttaccatttcaccaaaataatgaagttaaagaaacatatacaagctcaaacatttcatacttgctcataatcaaaatgcataattaaaactatttc |
29570580 |
T |
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| Q |
200 |
acatcttaaatgcttgatttcattgtcttt |
229 |
Q |
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| T |
29570579 |
acatcttaaatgcttgatttcattgtcttt |
29570550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 29570483 - 29570428
Alignment:
| Q |
296 |
tgctgtttattattgtgaaggctagcagaaacaccgatttaacccaatattcttcg |
351 |
Q |
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| T |
29570483 |
tgctgtttattattgtgaaggctagcagaaacaccaatttaacccaattttcttcg |
29570428 |
T |
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