View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15005_low_1 (Length: 365)
Name: NF15005_low_1
Description: NF15005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15005_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 4709982 - 4710317
Alignment:
| Q |
16 |
atgaatgttcaagtattaacatgagaatgaatcagagttatgagtatacaattcttatgcattaaaaatctgaaaaatcatgtgcatgatttaaatcaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709982 |
atgaatgttcaagtattaacatgagaatgaatcagagttatgagtatacaattcttatgcattaaaaatctgaaaaatcatgtgcatgatttaaatcaca |
4710081 |
T |
|
| Q |
116 |
ttattaggtggattcgaataatcattttttatcaagttgatttgagtcacattacgtggtcgatttaaattatgactctctgatgaagaaacatgatcca |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4710082 |
ttattaggtggattcgaataatcactttttatcaagttgatttgagtcacattacgtggtcgatttaaattatgactctctgattaagaaacatgatcca |
4710181 |
T |
|
| Q |
216 |
aaaatacaaaggtgatttgaatcgctaactaggttgattcgaatcacaactttttggtttatataggagtgttatgccagtatagatgcacactctaatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
4710182 |
aaaatacaaaggtgatttgaatcgctaactaggttgattcgaatcacaactttttggtttatataggagtgtgatgccagtatagatgggcactctaatt |
4710281 |
T |
|
| Q |
316 |
tcgtaaatgaataattt--tatccaaatgtataaag |
349 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4710282 |
tcgtaaatgaataattttgtatccaaatgtataaag |
4710317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University