View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15006_high_1 (Length: 625)
Name: NF15006_high_1
Description: NF15006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15006_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 9 - 612
Target Start/End: Original strand, 47074685 - 47075302
Alignment:
| Q |
9 |
agcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47074685 |
agcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgtggatcgcatgacaaaatttgcgc |
47074784 |
T |
|
| Q |
109 |
cttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatcta-------- |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47074785 |
cttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatctataaagtat |
47074884 |
T |
|
| Q |
201 |
------gaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtacatgatttccactgctattgaaatc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47074885 |
gaactagaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtgcatgatttccactgctattgaaatc |
47074984 |
T |
|
| Q |
295 |
aaaacactcaataagtaacggattatcctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47074985 |
aaaacactcaataagtaacggattatcctgcatagagaaagaaattaaaaaaatgtcagagtaatctatatatgaatatgatgtaacatcagacatgttg |
47075084 |
T |
|
| Q |
395 |
caaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtctt |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075085 |
caaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtctt |
47075184 |
T |
|
| Q |
495 |
gcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaagcaagatgagttttaagaatgtaataaataa |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075185 |
gcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaagcaagatgagttttaagaatgtaataaataa |
47075284 |
T |
|
| Q |
595 |
aacggatatgatggagct |
612 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
47075285 |
aacggatatgatggagct |
47075302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 370 - 563
Target Start/End: Original strand, 47057258 - 47057452
Alignment:
| Q |
370 |
atatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattta |
469 |
Q |
| |
|
||||||| |||||| |||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
47057258 |
atatgatttaacattagacatgttgtgttcaaagatcgcaagcttactatacttccaaactgctggaaattaagacaaactggtttccattttggattta |
47057357 |
T |
|
| Q |
470 |
aatt-gttgtctttaacttcagtcttgcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaa |
563 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47057358 |
aatttgttgtctataacttcagtcttgcaaataggaacagaacctccactctcaaccattcttgatatccttagaaaaggatcctacaagaaaaa |
47057452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 47056763 - 47056896
Alignment:
| Q |
55 |
caatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgctactgatttttg |
154 |
Q |
| |
|
||||||| |||||||||||||| |||||| | ||| ||||||||||||| | ||||||||||| | | ||||||||||||||||||||| || ||| || |
|
|
| T |
47056763 |
caatgaacaccttctcttgtcctttgcgtttggatggcatgacaaaattcacaccttttctctcattgcatagcttttcaaggtctgctattgttttctg |
47056862 |
T |
|
| Q |
155 |
cagtttactgttgccaacaaacattgatgtcact |
188 |
Q |
| |
|
|| ||||||| || |||||||| ||||||||||| |
|
|
| T |
47056863 |
cattttactgatggcaacaaactttgatgtcact |
47056896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 47056945 - 47057031
Alignment:
| Q |
244 |
tataatttgacattaccctataagtacatgatttccactgctattgaaatcaaaacactcaataagtaacggattatcctgcataga |
330 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| || ||| ||||||||||||||||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
47056945 |
tataatttgacattacccgattagtacatgattgccgctgatattgaaatcaaaacactcgataactaatggagtatcctgcataga |
47057031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 43 - 563
Target Start/End: Complemental strand, 18230687 - 18230146
Alignment:
| Q |
43 |
gatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgc |
142 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
18230687 |
gattgcagggatcaatgaacaccttctcttgtccattgcgtgtggatggcatgacaaaatttgcgccttttttttcttggtatagcttttcaaggtctgc |
18230588 |
T |
|
| Q |
143 |
tactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatcta------------------gaaagtgtaaagcctaaagaagtt |
224 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||| ||||||||| ||||||||||||| |||||||||||||||||| | ||| |
|
|
| T |
18230587 |
tactgattttttcagtttactgtcggcaacaaactttgatgtcagtattttgcatctatatatagtatatggactagaaagtgtaaagcctaaaaatgtt |
18230488 |
T |
|
| Q |
225 |
taggctaaacaaaaag----ctatataatttgacattaccctataagtacatgatttccactgctattgaaatcaaaacactcaataagtaacggattat |
320 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| || ||| ||| |
|
|
| T |
18230487 |
taggctaaacgaaaataaaacaatataatttgacattacccgataagtacatgattgccgctgctattgaaatcaaaacactcaataagcaatggagtat |
18230388 |
T |
|
| Q |
321 |
cctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttacttta |
420 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||| |||||||||||||| |
|
|
| T |
18230387 |
cctgcatagagaaagaaattaaaaaa-tgtcagagtaatctatatatgaatatggtgtaacatcggacatgttgtgcacaaagatcgaaagcttacttta |
18230289 |
T |
|
| Q |
421 |
cttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtcttgcaaataggaacagaacctccactct |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
18230288 |
cttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctataacttcagtcttgaaaataggaacagttcctccactct |
18230189 |
T |
|
| Q |
521 |
caacaattcttgatatccttagaaaaggatcctacaagaaaaa |
563 |
Q |
| |
|
|||| | || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
18230188 |
caaccactcgtgatatccttagaaaaggatcctgcaagaaaaa |
18230146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University