View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15006_high_3 (Length: 322)
Name: NF15006_high_3
Description: NF15006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15006_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 51740708 - 51740406
Alignment:
| Q |
19 |
tcaattaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatata |
118 |
Q |
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| T |
51740708 |
tcaattaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatata |
51740609 |
T |
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| Q |
119 |
cacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacac |
218 |
Q |
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| T |
51740608 |
cacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacac |
51740509 |
T |
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| Q |
219 |
aataattcctgatattattgtgttaagtactattgctactagcacaatgttgcaatcttctgcatttaaatcctgtatatacaataataaccaaattaag |
318 |
Q |
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| T |
51740508 |
aataattcctgatattattgtgttaagtactattgctactagcacaacgttgcaatcttctgcatttaaatcctgtatatacaataataaccaaattaag |
51740409 |
T |
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| Q |
319 |
agt |
321 |
Q |
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||| |
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| T |
51740408 |
agt |
51740406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 10201500 - 10201260
Alignment:
| Q |
22 |
attaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatatacac |
121 |
Q |
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| T |
10201500 |
attaagtgcattaaataagtggtggaaggtgatgttttagagccatgtattgctagtattgtggctagtatcgcagatacttgtcgaggatcatacacac |
10201401 |
T |
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| Q |
122 |
aagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaat |
221 |
Q |
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| T |
10201400 |
aagccaaaattttaagttcatcttccatttcttgtggttcaattgttgtatggttgtttgaaaacattttctcttccccctttgctataaacgacacaat |
10201301 |
T |
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| Q |
222 |
aattcctgatattattgtgttaagtactattgctactagca |
262 |
Q |
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| T |
10201300 |
tattcctgatattattgtgtttaatactatcgatactagca |
10201260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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