View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15006_low_2 (Length: 549)

Name: NF15006_low_2
Description: NF15006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15006_low_2
NF15006_low_2
[»] chr5 (10 HSPs)
chr5 (15-530)||(41433761-41434276)
chr5 (123-353)||(41446652-41446882)
chr5 (402-528)||(41446490-41446616)
chr5 (17-108)||(41446921-41447012)
chr5 (280-349)||(36212964-36213033)
chr5 (280-351)||(31113402-31113473)
chr5 (280-351)||(5123500-5123571)
chr5 (299-346)||(14119193-14119240)
chr5 (269-351)||(18244641-18244723)
chr5 (315-351)||(2760309-2760345)
[»] chr6 (7 HSPs)
chr6 (280-352)||(21910273-21910344)
chr6 (277-340)||(278456-278519)
chr6 (280-350)||(21028845-21028913)
chr6 (280-350)||(21028982-21029050)
chr6 (308-343)||(27432259-27432294)
chr6 (280-342)||(29986816-29986878)
chr6 (280-352)||(28933206-28933278)
[»] chr4 (15 HSPs)
chr4 (268-352)||(16994146-16994230)
chr4 (280-351)||(35334100-35334171)
chr4 (278-351)||(33529323-33529396)
chr4 (282-341)||(53084963-53085022)
chr4 (280-342)||(8059037-8059099)
chr4 (280-351)||(2434627-2434698)
chr4 (308-343)||(18069264-18069299)
chr4 (280-351)||(31307068-31307139)
chr4 (280-351)||(38766157-38766228)
chr4 (280-342)||(3649057-3649119)
chr4 (294-352)||(13686684-13686742)
chr4 (280-342)||(17135164-17135226)
chr4 (280-352)||(7096164-7096236)
chr4 (283-351)||(9012341-9012409)
chr4 (308-352)||(45994618-45994662)
[»] chr2 (4 HSPs)
chr2 (279-351)||(17285739-17285811)
chr2 (276-351)||(17981562-17981636)
chr2 (280-352)||(5394464-5394536)
chr2 (316-352)||(26296463-26296499)
[»] chr3 (6 HSPs)
chr3 (267-346)||(25739142-25739221)
chr3 (280-352)||(25224767-25224839)
chr3 (280-352)||(38331196-38331268)
chr3 (280-351)||(30995967-30996038)
chr3 (308-343)||(38349811-38349846)
chr3 (263-351)||(40294663-40294751)
[»] chr8 (6 HSPs)
chr8 (263-352)||(36994501-36994590)
chr8 (296-349)||(13005682-13005735)
chr8 (280-351)||(4125026-4125097)
chr8 (280-351)||(7839255-7839326)
chr8 (280-351)||(13468747-13468818)
chr8 (303-351)||(24988590-24988638)
[»] chr7 (6 HSPs)
chr7 (307-351)||(1424668-1424712)
chr7 (280-351)||(31492171-31492242)
chr7 (280-341)||(4059705-4059766)
chr7 (280-324)||(44450775-44450819)
chr7 (280-341)||(7265325-7265386)
chr7 (322-354)||(24579453-24579485)
[»] chr1 (10 HSPs)
chr1 (283-351)||(15642526-15642594)
chr1 (280-343)||(24801449-24801512)
chr1 (307-351)||(49071672-49071716)
chr1 (269-352)||(22022177-22022260)
chr1 (280-351)||(32534151-32534221)
chr1 (263-342)||(40019292-40019370)
chr1 (308-343)||(40701585-40701620)
chr1 (301-351)||(9639559-9639609)
chr1 (269-343)||(42266820-42266894)
chr1 (263-351)||(7242809-7242897)
[»] scaffold0189 (1 HSPs)
scaffold0189 (280-349)||(11020-11089)
[»] scaffold0182 (1 HSPs)
scaffold0182 (280-351)||(26399-26470)
[»] scaffold0003 (1 HSPs)
scaffold0003 (308-343)||(55069-55104)


Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Complemental strand, 41434276 - 41433761
Alignment:
Q  15 cataggggttagaaatttttggcatcagaattgacttctatgcaacaactttgtcaaatatagaaattatgtagacttatgatatgttagttgttgtagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41434276 cataggggttagaaatttttggcatcagaattgacttctatgcaacaactttgtcaaatatagaaattatgtagacttatgatatgttagttgttgtagt 41434177  T
Q  115 atttaaacttttgacttttccatttcagaaatttgtgccaatttagtttatactttagagacgttgtgtgcacaataccaaggagcgtttatatgagatt 214  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41434176 atttaaacttttgacttttccatttcagaaatttgtgtccatttagtttatactttagagacgttgtgtgcacaataccaaggagcgtttatatgagatt 41434077  T
Q  215 gcatgagtctcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttag 314  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41434076 gcatgagtctcttctagctcaaccaaaaacccagattcgaactcaagtttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttag 41433977  T
Q  315 gtcccacaagactcgagagattagtctccgcagttgcatatgatacttcatttacaccaaaaccttaattttcctgaaattgaatactcccttgacattt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41433976 gtcccacaagactcgagagattagtctccgcagttgcatatgatacttcatttgcaccaaaaccttaattttcctgaaattgaatactcccttgacattt 41433877  T
Q  415 tggtaatgataaaatcttgctatataaatatatattcgtcatttgcaattccatgtgcactttctagcaaatagcaaacactaaagctcctccacaacta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41433876 tggtaatgataaaatcttgctatataaatatatattcgtcatttgcaattccatgtgcactttctagcaaatagcaaacactaaagctcctccacaacta 41433777  T
Q  515 gtctgatcatacatgg 530  Q
    ||||||||||||||||    
T  41433776 gtctgatcatacatgg 41433761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 123 - 353
Target Start/End: Complemental strand, 41446882 - 41446652
Alignment:
Q  123 ttttgacttttccatttcagaaatttgtgccaatttagtttatactttagagacgttgtgtgcacaataccaaggagcgtttatatgagattgcatgagt 222  Q
    ||||||| |||||||||||||| |||  | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41446882 ttttgacctttccatttcagaatttttggtccatttagtttatactttagagacgttgtgtgcacaataccaaagagcgtttatatgagattgcatgagt 41446783  T
Q  223 ctcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccaca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  41446782 ctcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaatgttaaaactcttacagagagtttaccgctcatttgggtcccaca 41446683  T
Q  323 agactcgagagattagtctccgcagttgcat 353  Q
    ||||||||||||||||||||||| |||||||    
T  41446682 agactcgagagattagtctccgctgttgcat 41446652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 402 - 528
Target Start/End: Complemental strand, 41446616 - 41446490
Alignment:
Q  402 tcccttgacattttggtaatgataaaatcttgctatataaatatatattcgtcatttgcaattccatgtgcactttctagcaaatagcaaacactaaagc 501  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||  |||    
T  41446616 tcccttgacattttggtaatgataaaatctggctatataattatatattcatcatttgcaattccatgtgcactctctagcaaatagtaaacccttgagc 41446517  T
Q  502 tcctccacaactagtctgatcatacat 528  Q
    |||||||||||||||||||||||||||    
T  41446516 tcctccacaactagtctgatcatacat 41446490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 41447012 - 41446921
Alignment:
Q  17 taggggttagaaatttttggcatcagaattgacttctatgcaacaactttgtcaaatatagaaattatgtagacttatgatatgttagttgt 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  41447012 taggggttagaaatttttggcatcagaattgacttatatgcaacaactttgtcaaatatagaaattattaagacttatgatatattagttgt 41446921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 36212964 - 36213033
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagtt 349  Q
    ||||||||||||  |||||||| |||| ||||||||||||||||  |||||| |||| ||||||||||||    
T  36212964 ttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 31113402 - 31113473
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||  |||||  |||||| ||||| | |||||||| ||||||| |||||||||||||||||||    
T  31113402 ttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgc 31113473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 5123571 - 5123500
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||||||||||    
T  5123571 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 5123500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 14119240 - 14119193
Alignment:
Q  299 tttaccgctcatttaggtcccacaagactcgagagattagtctccgca 346  Q
    ||||||||||||||||||| || ||| |||||| ||||||||||||||    
T  14119240 tttaccgctcatttaggtctcaaaaggctcgagggattagtctccgca 14119193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 18244641 - 18244723
Alignment:
Q  269 atgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||| | |||||||||||||   |||| ||| || | ||||| ||| |||||| ||| |||||||||||||||||||||||    
T  18244641 atgcagcagcattaaaactctttgggagatttttccacccatttgggttccacaatacttgagagattagtctccgcagttgc 18244723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 2760309 - 2760345
Alignment:
Q  315 gtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  2760309 gtcccacaagactcgagggattagtctctgcagttgc 2760345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 21910273 - 21910344
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    |||||||||||| ||||||| | ||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  21910273 ttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc-agggattagtctccgcagttgca 21910344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 278456 - 278519
Alignment:
Q  277 acattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtc 340  Q
    |||||||||||||||  |||||||| |||  |||||||||||||||| |||| || ||||||||    
T  278456 acattaaaactcttatggagagtttgccgtccatttaggtcccacaaaactcaagggattagtc 278519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 21028913 - 21028845
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttg 350  Q
    ||||||||||||  |||||||| |||| ||||| ||| ||||||| ||| || ||||||||||||||||||    
T  21028913 ttaaaactctta--gagagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 21029050 - 21028982
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttg 350  Q
    ||||||||||||  |||||||| |||| ||||| ||| ||||||| ||| || ||||||||||||||||||    
T  21029050 ttaaaactctta--gagagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 27432259 - 27432294
Alignment:
Q  308 catttaggtcccacaagactcgagagattagtctcc 343  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27432259 catttaggtcccacaagactcgaaagattagtctcc 27432294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 29986816 - 29986878
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 342  Q
    |||||||||||   |||||||| ||||||||||  ||||||||| ||||||||||||| ||||    
T  29986816 ttaaaactctttaggagagtttgccgctcatttgagtcccacaaaactcgagagattaatctc 29986878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 28933206 - 28933278
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    |||||| ||||| ||||||||| |||| ||||| ||| ||||||  |||||| || |||| ||||||||||||    
T  28933206 ttaaaattcttagagagagtttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttgca 28933278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 16994146 - 16994230
Alignment:
Q  268 tatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    |||| |||| |||||||||||| |  |||||||| | || ||||||||| |||||||||||||| ||||||||||||||||||||    
T  16994146 tatgtagtagcattaaaactctaaaggagagtttgctgcccatttaggttccacaagactcgagtgattagtctccgcagttgca 16994230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 35334171 - 35334100
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||||||||| |||||||   |||| ||||| |||||||||| ||||||| |||||||||||||||||||    
T  35334171 ttaaaactcttagagagagtccgccgcccatttgggtcccacaatactcgagggattagtctccgcagttgc 35334100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 351
Target Start/End: Original strand, 33529323 - 33529396
Alignment:
Q  278 cattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||||  ||||| || |||| ||||| |||||||||| ||| ||| |||||||||||||||||||    
T  33529323 cattaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgc 33529396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 53085022 - 53084963
Alignment:
Q  282 aaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtct 341  Q
    ||||||||||  |||||||||||| | |||||||||| |||| |||||||||||||||||    
T  53085022 aaaactcttagggagagtttaccgtttatttaggtccgacaaaactcgagagattagtct 53084963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 8059099 - 8059037
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 342  Q
    |||||||||||| |||||||| ||| | ||||| |||||||||||||| ||| ||||||||||    
T  8059099 ttaaaactcttagagagagttgaccacccatttgggtcccacaagactggagtgattagtctc 8059037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 2434627 - 2434698
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||||||||||  | |||||  ||||||||||||||| ||||| |||||| |||| || |||||||||||    
T  2434627 ttaaaactcttacgaaaagtttgtcgctcatttaggtcctacaaggctcgagtgattggtatccgcagttgc 2434698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 18069299 - 18069264
Alignment:
Q  308 catttaggtcccacaagactcgagagattagtctcc 343  Q
    ||||||||||||||||||||||| ||||||||||||    
T  18069299 catttaggtcccacaagactcgaaagattagtctcc 18069264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 31307139 - 31307068
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||||||||||    
T  31307139 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 31307068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 38766157 - 38766228
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||  |||||| | |||| ||||| |||| |||||  |||||| |||||||||||||||||||    
T  38766157 ttaaaactcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgc 38766228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 3649119 - 3649057
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 342  Q
    ||||||||||||  |||||||| |||||||||| | || ||||||||||||  ||||||||||    
T  3649119 ttaaaactcttagggagagttttccgctcatttggatcgcacaagactcgaaggattagtctc 3649057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 13686684 - 13686742
Alignment:
Q  294 gagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    |||||||| |||  ||||| |||| |||||| |||||||||||||||||| ||||||||    
T  13686684 gagagtttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgca 13686742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 17135164 - 17135226
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 342  Q
    ||||||||||||  |||||||| |||| |||||  |||||| |||||||||| ||||||||||    
T  17135164 ttaaaactcttagggagagtttgccgcgcatttgagtcccagaagactcgagggattagtctc 17135226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 7096164 - 7096236
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    ||||||||||||  ||||| ||||||| ||||||||||  ||||  ||| |||||||||||| | ||||||||    
T  7096164 ttaaaactcttagggagagcttaccgcccatttaggtcttacaatgctcaagagattagtctgcacagttgca 7096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 9012341 - 9012409
Alignment:
Q  283 aaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||||||  ||||| || |||| || || ||||||||||  |||||| |||||||||||||||||||    
T  9012341 aaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgc 9012409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 45994618 - 45994662
Alignment:
Q  308 catttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    ||||| |||| |||||  |||||||||||||||||||||||||||    
T  45994618 catttgggtctcacaatgctcgagagattagtctccgcagttgca 45994662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 17285811 - 17285739
Alignment:
Q  279 attaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||| | ||  |||||||||| ||||||||    
T  17285811 attaaaattcttacagagagtttaccgctcatttagatcctacaagatttgatggattagtctctgcagttgc 17285739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 351
Target Start/End: Original strand, 17981562 - 17981636
Alignment:
Q  276 aacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||||||  ||||| || ||||  |||| ||||||||||  ||||||||||||||||||||||||||    
T  17981562 aacattaaaactcttagggagagcttgccgca-atttgggtcccacaatgctcgagagattagtctccgcagttgc 17981636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 5394464 - 5394536
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||| | ||||||||||||||||||||    
T  5394464 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgca 5394536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 26296463 - 26296499
Alignment:
Q  316 tcccacaagactcgagagattagtctccgcagttgca 352  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  26296463 tcccacaaggctcgagagattagtctccacagttgca 26296499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 25739142 - 25739221
Alignment:
Q  267 atatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgca 346  Q
    |||||||| | ||||||||||||||  |||||||| |||| ||||| ||||||| ||||||||| | |||||||||||||    
T  25739142 atatgcaggagcattaaaactcttagggagagttttccgcccatttgggtcccataagactcgataaattagtctccgca 25739221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 25224767 - 25224839
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    ||||||||||||  ||||  || |||| ||||||||||||||||  ||| || ||||||||||||||||||||    
T  25224767 ttaaaactcttaaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgca 25224839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 38331196 - 38331268
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    |||||||||||| |||||| || |||| ||||| ||||||||||   | ||| ||||||||||||||||||||    
T  38331196 ttaaaactcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgca 38331268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 30996038 - 30995967
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||  |||||| | |||| ||| | ||||||||||  |||||| |||||||||||||||||||    
T  30996038 ttaaaactcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgc 30995967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 38349811 - 38349846
Alignment:
Q  308 catttaggtcccacaagactcgagagattagtctcc 343  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38349811 catttaggtcccacaagactcgaaagattagtctcc 38349846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 351
Target Start/End: Original strand, 40294663 - 40294751
Alignment:
Q  263 ttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||||||||  ||  ||||||||||||  || || || ||||||||||   |||||||| ||||||  |||||||||||||||||||    
T  40294663 ttggatatgcaacaatgttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgc 40294751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 36994590 - 36994501
Alignment:
Q  263 ttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    ||||| |||||| | | ||||||||||||  |||||||| | || ||||| ||||||||||| |||||| |||||||||| |||||||||    
T  36994590 ttggacatgcagcagcgttaaaactcttaaggagagtttgctgcccatttgggtcccacaaggctcgagggattagtctctgcagttgca 36994501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 13005735 - 13005682
Alignment:
Q  296 gagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagtt 349  Q
    ||||||||||  ||||||||||||||||| ||| |||||| |||||||||||||    
T  13005735 gagtttaccgtccatttaggtcccacaaggctcaagagatcagtctccgcagtt 13005682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 4125097 - 4125026
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||||||||||    
T  4125097 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 4125026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 7839326 - 7839255
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||||||||||    
T  7839326 ttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 7839255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 13468818 - 13468747
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||||||||| ||||||| | |||| |||||  |||||||||  |||||  |||||||||||||||||||    
T  13468818 ttaaaactcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgc 13468747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 24988590 - 24988638
Alignment:
Q  303 ccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||  ||||||||| ||||||| |||||||||||||| ||||    
T  24988590 ccgctcatttgagtcccacaatactcgagggattagtctccgcaattgc 24988638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 1424668 - 1424712
Alignment:
Q  307 tcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  1424668 tcatttgggtcccacaagacttgagagattagtctccgcagttgc 1424712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 31492171 - 31492242
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||  |||||  | |||| ||||||||||||||||  |||||| |||||||||||||||||||    
T  31492171 ttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgc 31492242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 4059766 - 4059705
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtct 341  Q
    |||||||||||| ||||||||| ||| | |||| |||| ||||||||||||| |||||||||    
T  4059766 ttaaaactcttagagagagttttccgtttatttgggtcacacaagactcgagggattagtct 4059705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 44450819 - 44450775
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaag 324  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||    
T  44450819 ttaaaaattttacagagagtttaccgttcatttaggtcccacaag 44450775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 7265386 - 7265325
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtct 341  Q
    ||||||||||||  |||||||| | |||||||| |||||||||| ||||||  |||||||||    
T  7265386 ttaaaactcttagggagagtttgctgctcatttgggtcccacaatactcgaatgattagtct 7265325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 354
Target Start/End: Complemental strand, 24579485 - 24579453
Alignment:
Q  322 aagactcgagagattagtctccgcagttgcata 354  Q
    ||||||||||||||||||||| |||||||||||    
T  24579485 aagactcgagagattagtctctgcagttgcata 24579453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 15642526 - 15642594
Alignment:
Q  283 aaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||||||  |||||||| |||| ||||| ||||||||||  |||||||||||| |||||||||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgc 15642594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 24801449 - 24801512
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctcc 343  Q
    ||||||||||||  ||||||||||||  |||||  |||||||||||||| ||||||||||||||    
T  24801449 ttaaaactcttagggagagtttaccgtccatttgagtcccacaagactcaagagattagtctcc 24801512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 49071672 - 49071716
Alignment:
Q  307 tcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||    
T  49071672 tcatttgggtcccacaatgctcgagagattagtctccgcagttgc 49071716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 22022177 - 22022260
Alignment:
Q  269 atgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgca 352  Q
    |||||| | ||||||||||||||  ||||  || || | ||||| |||||||||| | ||||| ||||||||||||||||||||    
T  22022177 atgcagcagcattaaaactcttagggagaacttgccacccatttgggtcccacaatattcgagggattagtctccgcagttgca 22022260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 32534151 - 32534221
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||||||||| |||||| ||||||| |||| ||||| |||||  |||||||| |||||||||||| ||||    
T  32534151 ttaaaactcttagagagagcttaccgcccatt-aggtctcacaatgctcgagaggttagtctccgcaattgc 32534221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 40019292 - 40019370
Alignment:
Q  263 ttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctc 342  Q
    |||||||||||| ||| |||||||||||   |||||||| |  |||||||| ||||||||| |||| |||||||||||||    
T  40019292 ttggatatgcagcaacgttaaaactcttggggagagtttgca-ctcatttaagtcccacaaaactcaagagattagtctc 40019370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 40701585 - 40701620
Alignment:
Q  308 catttaggtcccacaagactcgagagattagtctcc 343  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40701585 catttaggtcccacaagactcgaaagattagtctcc 40701620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 9639609 - 9639559
Alignment:
Q  301 taccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    |||||| ||||| ||||| | ||||||||||||||||||||||||| ||||    
T  9639609 taccgcccatttgggtcctaaaagactcgagagattagtctccgcaattgc 9639559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 42266820 - 42266894
Alignment:
Q  269 atgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctcc 343  Q
    |||||| |||||||| || |||| |||||| || |||| ||||||  ||||||||||||| || |||||||||||    
T  42266820 atgcagcaacattaacacacttaaagagagcttgccgcccatttaaatcccacaagactcaagtgattagtctcc 42266894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 351
Target Start/End: Complemental strand, 7242897 - 7242809
Alignment:
Q  263 ttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||| |||||| ||| ||||||||||||  |||||| |||| | |||||   || || || ||||||| |||||||||||||||||||    
T  7242897 ttggacatgcagcaacgttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccgcagttgc 7242809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 11020 - 11089
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagtt 349  Q
    ||||||||||||| |||||||| |||| |||||||||  ||||| |||||| |||||| ||||| |||||    
T  11020 ttaaaactcttacggagagtttgccgcccatttaggtttcacaaaactcgatagattaatctccacagtt 11089  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 26399 - 26470
Alignment:
Q  280 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 351  Q
    ||||||||||||  |||||  | |||| ||||| ||||||||||   |||||||||||||||||||||||||    
T  26399 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgc 26470  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 55104 - 55069
Alignment:
Q  308 catttaggtcccacaagactcgagagattagtctcc 343  Q
    ||||||||||||||||||||||| ||||||||||||    
T  55104 catttaggtcccacaagactcgaaagattagtctcc 55069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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