View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15006_low_5 (Length: 266)
Name: NF15006_low_5
Description: NF15006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15006_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 8855606 - 8855838
Alignment:
| Q |
15 |
cagagatgggtaccgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagta |
114 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||||||| |
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| T |
8855606 |
cagagatgggtactgatcaggtttgaaatccccgggatgatcaccatatgtccctcaaaagcagaagagaaaatgaaaacaggtaccaatatgatcagta |
8855705 |
T |
|
| Q |
115 |
ttggtggtagttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |
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| T |
8855706 |
ttggtggtagttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataaacaaaaaacaaaacttgc-tg |
8855804 |
T |
|
| Q |
215 |
taacagaaagcaacttcttatatatagtaataaa |
248 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8855805 |
taacagaaagcaacttcttatatatagtaataaa |
8855838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 25556309 - 25556089
Alignment:
| Q |
22 |
gggtaccgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagtattggtgg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
25556309 |
gggtaccgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaacaagtcccaatatgatcagtattggtgg |
25556210 |
T |
|
| Q |
122 |
tagttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgac-ttgagtatttgaataagcaaaaaacaaaacctgcttgtaacag |
220 |
Q |
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| T |
25556209 |
tagttaatcgaccacatcaagcaaaaacgagttaatcactctgatagttatacgacattgagtatttgaat-------aaacaaaacctgcttgtaacag |
25556117 |
T |
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| Q |
221 |
aaagcaacttcttatatatagtaataaa |
248 |
Q |
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| T |
25556116 |
aaagcaacttcttatatgtagtaataaa |
25556089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 14367553 - 14367321
Alignment:
| Q |
15 |
cagagatgggtaccgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagta |
114 |
Q |
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||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| | ||| |||||||||||||| |
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| T |
14367553 |
cagagatgggtactgctcacgtttgaaatccccgggatgatcaccatatgtccctcaaaagaagaagggaaaatgaaacaaggtaccaatatgatcagta |
14367454 |
T |
|
| Q |
115 |
ttggtggtagttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttg |
214 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || ||| |
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| T |
14367453 |
ttggtggtagtcaatcgtccacatcaagcaaaaaagagttaatcactcagatagttatacgacttgagtatttgaataaacaaaaaacaaaacttg-ttg |
14367355 |
T |
|
| Q |
215 |
taacagaaagcaacttcttatatatagtaataaa |
248 |
Q |
| |
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|||||| |||||||||||||||||| |||||||| |
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|
| T |
14367354 |
taacaggaagcaacttcttatatattgtaataaa |
14367321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 19576033 - 19576224
Alignment:
| Q |
56 |
caccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagtattggtggtagttaatcgaccacatcaagcaaaaaagagtta |
155 |
Q |
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||||||||||||||| |||| |||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19576033 |
caccatatgtccctcaaaagaagaagagaaaatgaaacaaggtaccaatatgatcagtattggtggtagtcaatcgaccacatcaagcaaaaaagagtta |
19576132 |
T |
|
| Q |
156 |
atcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttgtaacagaaagcaacttcttatatatagtaataaa |
248 |
Q |
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|||| || |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |
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| T |
19576133 |
atcattcagatagttatacgacttgagtatttgaataaacaaaaaacaaaacttg-ttgtaacaggaagcaacttcttatatatagtaataaa |
19576224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 26383562 - 26383448
Alignment:
| Q |
125 |
ttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttgtaacagaaag |
224 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||| ||| |||||||| ||| |
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| T |
26383562 |
ttaatcgaccacatcaagcaaaaaagagttaatgacttggatagttatacaacttgagtatttgaataaacaaaaaacaaaacttgc-tgtaacaggaag |
26383464 |
T |
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| Q |
225 |
caacttcttatatata |
240 |
Q |
| |
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|||||||||||||||| |
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| T |
26383463 |
caacttcttatatata |
26383448 |
T |
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