View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_high_10 (Length: 319)
Name: NF15007_high_10
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 3341172 - 3341466
Alignment:
| Q |
16 |
atattttggggcaggtgggaaaccctgaaacttcttatgctgaggattggtggggtatgattgattatgcttggagccatgcagtgatatctgatgaaac |
115 |
Q |
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| T |
3341172 |
atattttggggcaggtgggaaaccctgaaacttcttatgctgaggattggtggggtatgattgattatgcttggagccatgcagtgatatctgatgaaac |
3341271 |
T |
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| Q |
116 |
tcacaaattacttaaaacaaattgtgaatttaatagcagtgaagatatattgagtaaggatgatgtatgtaataaaggattagatgaaatgttcaagcag |
215 |
Q |
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| T |
3341272 |
tcacaaattacttaaaacaaattgtgaatttaaaagcagtgaagatatattgagtaaggatgatgtatgtaataaaggattagatgaaatgttcaagcag |
3341371 |
T |
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| Q |
216 |
tacaatgaaattgatatctacagtctttacacccctacttgcttagccaacaaggggatttcaaaaccaatgcaaaaggttatgaagcgttcatc |
310 |
Q |
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| T |
3341372 |
tacaatgaaattgatatctacagtctctacacccctacttgcttagccaacaaggggatttcaaaaccaatgcaaaaggttatgaagcgttcatc |
3341466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 3333444 - 3333540
Alignment:
| Q |
19 |
ttttggggcaggtgggaaaccctgaaacttcttatgctgaggattggtggggtatgattgattatgcttggagccatgcagtgatatctgatgaaac |
115 |
Q |
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| T |
3333444 |
tttttgggcagctgggaaaccctgaaacttcttatgctgaagattggttaggaatggtcgattatgcttggagtcatgcagtgatatctgatgaaac |
3333540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 8349148 - 8349241
Alignment:
| Q |
19 |
ttttggggcaggtgggaaaccctgaaacttcttatgctgaggattggtggggtatgattgattatgcttggagccatgcagtgatatctgatgaaac |
115 |
Q |
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| T |
8349148 |
tttttgggcagctgggaaaccctgaaactt---atgctgaagattagttaggaatggttgattatgcttggagtcatgcagtgatatatgatgaaac |
8349241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 42820473 - 42820380
Alignment:
| Q |
19 |
ttttggggcaggtgggaaaccctgaaacttcttatgctgaggattggtggggtatgattgattatgcttggagccatgcagtgatatctgatgaaac |
115 |
Q |
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| T |
42820473 |
tttttgggcagctgggaaaccctgaaactt---atgctgaagattagttaggaatggttgattatgcttggagtcatgcagtgatatatgatgaaac |
42820380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 8349318 - 8349358
Alignment:
| Q |
198 |
gatgaaatgttcaagcagtacaatgaaattgatatctacag |
238 |
Q |
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| T |
8349318 |
gatgaagtgctcaaacagtacaatgaaattgatatctacag |
8349358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 42820303 - 42820263
Alignment:
| Q |
198 |
gatgaaatgttcaagcagtacaatgaaattgatatctacag |
238 |
Q |
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| T |
42820303 |
gatgaagtgctcaaacagtacaatgaaattgatatctacag |
42820263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 35793923 - 35793837
Alignment:
| Q |
36 |
aaccctgaaacttcttatgctgaggattggtggggtatgattgattatgcttggagccatgcagtgatatctgatgaaactcacaaa |
122 |
Q |
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| T |
35793923 |
aaccctgaaacatctgatgctgaggattggatgggactagttgattatgcctggagtcatgctgtgatatctgatgaaactcacaaa |
35793837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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