View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15007_high_11 (Length: 275)

Name: NF15007_high_11
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15007_high_11
NF15007_high_11
[»] chr1 (3 HSPs)
chr1 (1-97)||(51252846-51252942)
chr1 (168-243)||(51253079-51253154)
chr1 (125-156)||(51252995-51253026)
[»] chr3 (1 HSPs)
chr3 (1-67)||(53598850-53598916)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 51252846 - 51252942
Alignment:
Q  1 atggctgcactttgtcctggtcaagatgaatgctctcttgccatttacctctctggtttccaacaagttgtgagtgttcatctcttttctaccatct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51252846 atggctgcactttgtcctggtcaagatgaatgctctcttgccatttacctctctggtttccaacaagttgtgagtgttcatctcttttctaccatct 51252942  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 51253079 - 51253154
Alignment:
Q  168 ggttctcaccattttctgggtacaatgctcttctcataaaaacaactgtctagcagctacaataacgcttcttttc 243  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51253079 ggttgtcaccattttctgggtacaatgctcttctcataaaaacaactgtctagcagctacaataacgcttcttttc 51253154  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 51252995 - 51253026
Alignment:
Q  125 ttccgacaccaacatatatgattatattttat 156  Q
    ||||||||||||||||||||||||||||||||    
T  51252995 ttccgacaccaacatatatgattatattttat 51253026  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 53598850 - 53598916
Alignment:
Q  1 atggctgcactttgtcctggtcaagatgaatgctctcttgccatttacctctctggtttccaacaag 67  Q
    |||||||| |||||||| || ||||||||||||||  ||||||| || ||| ||||||| |||||||    
T  53598850 atggctgctctttgtcccggacaagatgaatgctcaattgccatctatctcactggttttcaacaag 53598916  T

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