View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_high_6 (Length: 398)
Name: NF15007_high_6
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 44528694 - 44528311
Alignment:
| Q |
1 |
taagacaatgcatgcgttcttcttacgaggaagacttagaagcaacttattgaatcttaaggtacttacaaattaatctcataaaagacttgtaacaacg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44528694 |
taagacaatgcatgcgttctccttacgaggaagacttagaagcaacttattgaatgttaaggtacttacaaattaatctcataaaagacttgtaacaacg |
44528595 |
T |
|
| Q |
101 |
agcgatannnnnnnatctttaaatatgcagattgagcaagaacaacaaatccattactttgatgttttccttctatgtcactgatgaatttgttgtgagt |
200 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44528594 |
agcgacatttttttatctttaaatatgcagattgagcaagaacaacaaatccattactt-gatgttttccttctatgtcactgatgaatttgttgtgagt |
44528496 |
T |
|
| Q |
201 |
gctcatttcatgtaaagataaagacacctcttttattcttttccttaaagtgcaaatcttttctgagtaaacgcatgaaagagtgctcactgctcaatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44528495 |
gctcatttcatgtaaagataaagacacctcttttattcttttccttaaagtgcaaatcttttctgagtaaacgcatgaaagagtgctcactgctcaatcc |
44528396 |
T |
|
| Q |
301 |
gcgtatatttacattttaagtacatttacatctcgcaccctggat--atatttacatcttgtaacctgcatatatttacaacacc |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
44528395 |
gcgtatatttacattttaagtacatttacatctcgcaccctggatatatatttacatcttgtagcctgcatatatttacaacacc |
44528311 |
T |
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