View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15007_low_1 (Length: 800)

Name: NF15007_low_1
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15007_low_1
NF15007_low_1
[»] chr2 (5 HSPs)
chr2 (87-784)||(19054939-19055634)
chr2 (632-784)||(19191016-19191168)
chr2 (642-776)||(6897717-6897851)
chr2 (122-187)||(20217864-20217929)
chr2 (122-189)||(29503319-29503386)
[»] chr8 (2 HSPs)
chr8 (122-187)||(18897214-18897279)
chr8 (122-176)||(35690038-35690092)
[»] chr4 (4 HSPs)
chr4 (122-189)||(7949414-7949482)
chr4 (122-189)||(32992660-32992728)
chr4 (122-189)||(37274419-37274487)
chr4 (649-776)||(51730427-51730554)
[»] chr7 (5 HSPs)
chr7 (122-184)||(42712006-42712069)
chr7 (126-189)||(41487411-41487475)
chr7 (122-189)||(2882998-2883065)
chr7 (122-187)||(19553501-19553567)
chr7 (122-187)||(29785263-29785329)
[»] chr3 (2 HSPs)
chr3 (142-189)||(50731053-50731100)
chr3 (142-189)||(50781754-50781801)
[»] chr1 (3 HSPs)
chr1 (122-189)||(17745217-17745284)
chr1 (122-184)||(43446011-43446074)
chr1 (129-189)||(23398995-23399056)


Alignment Details
Target: chr2 (Bit Score: 638; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 87 - 784
Target Start/End: Original strand, 19054939 - 19055634
Alignment:
Q  87 ctcattaatttaaaattgtaaaataataataaggagctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttct 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19054939 ctcattaatttaaaattgtaaaataataataaggagctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttct 19055038  T
Q  187 tcagtcgcatttgatcataattttaacaaagtgaggaattttgatggcgaatgtgaccctagataattattgatggagtctatgaaagaacaagaaaact 286  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055039 tcagtcgcatttgatgataattttaacaaagtgaggaattttgatggtgaatgtgaccctagataattattgatggagtctatgaaagaacaagaaaact 19055138  T
Q  287 taatataaaagagtaaacatgcatagaataaacctattttgaatttatcattttatggaccaattgacattgtttgtcccttttcaggtgtcctttacct 386  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  19055139 taatataaaagagtaaacatgcatagaataaatctattttgaatttatcattttatgtaccaattgaaattgtttgtcccttttcaggtgtcctttacct 19055238  T
Q  387 gtttctctaatagaaacataatacatatgcacgtgtaaaaattagtaacaaatagaagggnnnnnnntgttcttattatagggaatattatgtaagaaat 486  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  19055239 gtttctcttatagaaacataatacat--gcacgtgtaaaaattagtaacaaatagaagggaaaaaaatgttcttattatagggaatattatgtaagaaat 19055336  T
Q  487 ggagaagtgcatattatcctatctagatatcaaggattttaaacatctttggttaacaacagcatagcctttaatttagtttacatgttggtaattttgt 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055337 ggagaagtgcatattatcctatctagatatcaaggattttaaacatctttggttaacaacagcatagcctttaatttagtttacatgttggtaattttgt 19055436  T
Q  587 tttaataattttattgataaacctaattattttactctcaacttgattttcagaagtactacttcgagtttgtagtggtttgcactggaaaatatggaga 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19055437 tttaataattttattgataaacctaattattttactctcaacttgattttcagaagtactgcttcgagtttgtagtggtttgcactggaaaatatggaga 19055536  T
Q  687 cataccattgatgccaacatttccatgcaacaagggacctgaggtgttcaagggtaaggttttgcataccattgattattgtaaacttgataaagaag 784  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19055537 cataccattgatgccaacatttccatgcaacaagggacctgaggtgttcaagggtaaggttttgcataccattgattattgtaaacttgataaagaag 19055634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 632 - 784
Target Start/End: Complemental strand, 19191168 - 19191016
Alignment:
Q  632 attttcagaagtactacttcgagtttgtagtggtttgcactggaaaatatggagacataccattgatgccaacatttccatgcaacaagggacctgaggt 731  Q
    ||||||||  |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19191168 attttcagcggtaccacttcgagtttgttgttgtttgcactggaaaatatggagacataccattgatgccaacatttccatgcaacaagggacctgaggt 19191069  T
Q  732 gttcaagggtaaggttttgcataccattgattattgtaaacttgataaagaag 784  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19191068 gtttaagggtaaggttttgcataccattgattattgtaaacttgataaagaag 19191016  T

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Target: chr2; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 642 - 776
Target Start/End: Complemental strand, 6897851 - 6897717
Alignment:
Q  642 gtactacttcgagtttgtagtggtttgcactggaaaatatggagacataccattgatgccaacatttccatgcaacaagggacctgaggtgttcaagggt 741  Q
    |||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||    
T  6897851 gtaccacttcgagtttatagtggtttgcactggaaaatatggagatataccattgatgccaaaatttccatacaacaagggccctgaggtgttcaagggt 6897752  T
Q  742 aaggttttgcataccattgattattgtaaacttga 776  Q
    |||| ||||||||||||||| ||||||||||||||    
T  6897751 aaggctttgcataccattgagtattgtaaacttga 6897717  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 20217864 - 20217929
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttctt 187  Q
    ||||||||||||||||| | |||||||||||||  ||  |||||| ||||||||||||||||||||    
T  20217864 gctcctcctcaaggtcttaggttcgattcttccatgtgccaatttgagtgggctatttagcttctt 20217929  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 29503319 - 29503386
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggc-tatttagcttcttca 189  Q
    ||||||||||||||||| | ||||||||| ||| ||| |||||||||||||||  ||||||||||||||    
T  29503319 gctcctcctcaaggtctcaggttcgattc-tcccggtgtcaatttaagtgggcaaatttagcttcttca 29503386  T

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Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 18897214 - 18897279
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttctt 187  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||| ||||| |||||||||||||    
T  18897214 gctcctcctcaaggtctcatgttcgattcttcctggtgccaatttaggtgggatatttagcttctt 18897279  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 35690092 - 35690038
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta 176  Q
    ||||||||||||||||| | ||||||||||  ||||| ||||||||||| |||||    
T  35690092 gctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaagtaggcta 35690038  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 7949482 - 7949414
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 189  Q
    ||||||||||||||||| | ||||||||||  ||||| |||||||| ||||||| ||||||||||||||    
T  7949482 gctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttcttca 7949414  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 32992660 - 32992728
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttcttca 189  Q
    ||||||||||||||||| | |||||||||| || ||| ||||||| ||||| ||| |||||||||||||    
T  32992660 gctcctcctcaaggtctcaagttcgattctccccggtgtcaatttgagtggactagtttagcttcttca 32992728  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 37274487 - 37274419
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 189  Q
    ||||||||||||||||| | ||||||||||  |||||   |||||||||||||| ||||||||||||||    
T  37274487 gctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgggctaatttagcttcttca 37274419  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 776
Target Start/End: Complemental strand, 51730554 - 51730427
Alignment:
Q  649 ttcgagtttgtagtggtttgcactggaaaatatggagacataccattgatgccaacatttccatgcaacaagggacctgaggtgttcaagggtaaggttt 748  Q
    ||||||||||| |||||||||  ||| |||||||| ||||||||   ||| |||  |||||||||||| || || |||||||| ||||| || || ||      
T  51730554 ttcgagtttgtggtggtttgcgttgggaaatatggggacatacctaagattccagtatttccatgcaaaaaaggccctgaggtattcaatggcaatgtcc 51730455  T
Q  749 tgcataccattgattattgtaaacttga 776  Q
    | |||||  ||||||| |||||||||||    
T  51730454 tacatacacttgattactgtaaacttga 51730427  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 42712006 - 42712069
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagctt 184  Q
    ||||||||||||||||| |||||||||||| ||| || |||||||| ||||||| |||||||||    
T  42712006 gctcctcctcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaatttagctt 42712069  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 41487411 - 41487475
Alignment:
Q  126 ctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 189  Q
    ||||||||||||| | ||||||||||||| |||  ||||||| ||||||| ||||||||||||||    
T  41487411 ctcctcaaggtctcaggttcgattcttcccggtgccaatttaggtgggctaatttagcttcttca 41487475  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 2882998 - 2883065
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttcttca 189  Q
    ||||||||||||||||| | |||| |||||  |||||  ||||||| |||||||| ||||||||||||    
T  2882998 gctcctcctcaaggtctcaggttcaattctctctggtggcaatttaggtgggctacttagcttcttca 2883065  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 19553501 - 19553567
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttctt 187  Q
    ||||||||||||||||| | |||| ||||| || |||| ||||||| |||||||| |||||||||||    
T  19553501 gctcctcctcaaggtcttaggttcaattctccccggttccaatttaggtgggctactttagcttctt 19553567  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 29785329 - 29785263
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagcttctt 187  Q
    ||||||||||||||||| ||||||||||||| |||||  |||||| || ||| || |||||||||||    
T  29785329 gctcctcctcaaggtctcatgttcgattctttctggtgccaatttgagggggttagtttagcttctt 29785263  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 50731100 - 50731053
Alignment:
Q  142 gttcgattcttcctggtttcaatttaagtgggctatttagcttcttca 189  Q
    ||||||||||| ||||| ||||||| | ||||||||||||||||||||    
T  50731100 gttcgattcttactggtgtcaatttgaatgggctatttagcttcttca 50731053  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 50781754 - 50781801
Alignment:
Q  142 gttcgattcttcctggtttcaatttaagtgggctatttagcttcttca 189  Q
    ||||||||||| ||||| ||||||| | ||||||||||||||||||||    
T  50781754 gttcgattcttactggtgtcaatttgaatgggctatttagcttcttca 50781801  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 17745284 - 17745217
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggctatttagcttcttca 189  Q
    |||||||||| |||||| ||||||||||||  ||||| |||||||| ||||   ||||||||||||||    
T  17745284 gctcctcctcgaggtctcatgttcgattctctctggtgtcaatttaggtggttaatttagcttcttca 17745217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 43446011 - 43446074
Alignment:
Q  122 gctcctcctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggcta-tttagctt 184  Q
    ||||||||||||||||| |||||||||||| || |||  |||||| ||||||||| ||||||||    
T  43446011 gctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagtttagctt 43446074  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 23398995 - 23399056
Alignment:
Q  129 ctcaaggtctgatgttcgattcttcctggtttcaatttaagtgggct-atttagcttcttca 189  Q
    |||||||||| | ||||||||||||||  | |||||||||||||| | ||||||||||||||    
T  23398995 ctcaaggtctcaagttcgattcttccttatgtcaatttaagtgggttcatttagcttcttca 23399056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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