View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_low_11 (Length: 366)
Name: NF15007_low_11
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 42786515 - 42786865
Alignment:
| Q |
1 |
aatgagatttttggatcttttctaatttcacttgatgtgttgagttcaaatccagcaatataa---atgcagcaactacaaaactcttgatcgagaattt |
97 |
Q |
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| T |
42786515 |
aatgagatttttggatcttttctaatttcacttgatgtgttgagtttgaatccagcaatataataaatgcaacaactacaaaactcttgatcgagaattt |
42786614 |
T |
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| Q |
98 |
tgtcgtccattgaggtcctgccctggtaaaggaacccgtgcgtgaatgctaccttgtttagacaaaagaagaaaatcaaattattaatagagcatcattt |
197 |
Q |
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| T |
42786615 |
tgtcgtccattgaggtcctgccctggtcaaggaacccgtgcgtgaatgctaccttgtttagacaaaagaagaaaatcaaattattaatagagcatcattt |
42786714 |
T |
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| Q |
198 |
tattagctatagccaaatcttggataattattatctataatagtaaagatatagttaaataatacatacttacaaaagaacctgagggatatttgatgaa |
297 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42786715 |
tattagctatagccaaatcttggataattat------------------tatagttaaataatacatacttacaaaagaacctgagggatatttgatgaa |
42786796 |
T |
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| Q |
298 |
tttatatgagttgattgagacgacatatatacatagtaatggagacaacagagaaagaaggagctcccc |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42786797 |
tttatatgagttgattgagacgacatatatacatagtaatggagacaacagagaaagaaggagctcccc |
42786865 |
T |
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