View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_low_14 (Length: 284)
Name: NF15007_low_14
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 129 - 268
Target Start/End: Original strand, 6340221 - 6340370
Alignment:
| Q |
129 |
ggtttgcctgttgcaaccatctcattatttatagggccaaattaatgttctgattcaaaactatattannnnnnnagagactgattc----------agt |
218 |
Q |
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| T |
6340221 |
ggtttgcatgttgcaaccatctcattatttatagggccaaattaatgttctgattcaaaactatattatttttttagagactgattcaaatcatatgagt |
6340320 |
T |
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| Q |
219 |
caatgttctttccatattttatcctcatccaaaataattgatctgcttgt |
268 |
Q |
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| T |
6340321 |
caatgttctttccatattttatcctcatccaaaataattgatctacttgt |
6340370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 6340111 - 6340157
Alignment:
| Q |
19 |
ccttcaccttttggcctctgttaaagatacttttcacccctgaatac |
65 |
Q |
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| T |
6340111 |
ccttcaccttttggcctctgttaaagatacttttcacccctgaatac |
6340157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 6324630 - 6324659
Alignment:
| Q |
140 |
tgcaaccatctcattatttatagggccaaa |
169 |
Q |
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| T |
6324630 |
tgcaaccatctcattatttatagggccaaa |
6324659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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