View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_low_17 (Length: 254)
Name: NF15007_low_17
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 29091191 - 29090938
Alignment:
| Q |
1 |
tgatgaaattcttagccgcaaaatgaactttatgggtttagtatttcttttattgtggatagcctaacttagaagcaattctttgcctttactaatattt |
100 |
Q |
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| T |
29091191 |
tgatgaaattcttagccgcaaaatgaactttatgggtttagtatttcttttattgtggatagcctaacttagaagcaattctttgcctttac---tattt |
29091095 |
T |
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| Q |
101 |
catgagaaaaatgaaaatgtacaaataagga----------aatatctttatcaaagaaatctactacatagaaacctatgacaagagaatcatgtcagg |
190 |
Q |
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| T |
29091094 |
catgagaaaaatgaaaatgtacaaataaagaaatctatctgaatatctttatcaaagaaat---ctatatagaaacctatgacaagagaatcatgtcagg |
29090998 |
T |
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| Q |
191 |
aaatggggattcgaggtttcaaaaagttgtttaggataatcctataaagaagtgacctatg |
251 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29090997 |
aaat-gggattcgaggtttcaaaaagttggttaggataatcctataaagaagtgacctatg |
29090938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29083869 - 29083649
Alignment:
| Q |
1 |
tgatgaaattcttagccgcaaaatgaa-ctttatgggtttagtatttcttttattgtggatagcctaacttagaagcaattctttgcctttactaatatt |
99 |
Q |
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||||||||||||||||||||| || || ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
29083869 |
tgatgaaattcttagccgcaagattaaactttatgggttaagtatttcttatattgtggatagcctaacttagaagcaattctttgcctttgc---tatt |
29083773 |
T |
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| Q |
100 |
tcatgagaaaaatgaaaatgtacaaataaggaaat----------atctttatcaaagaaatctactacatagaaacctatgacaagagaatcatgtcag |
189 |
Q |
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| T |
29083772 |
tcatgagaaaaatgaaaatgtacaaataaggaaatctatatgaaaatctttatcaaagaaat---ctatatggaaacctatgacaagaaaatcatgtcag |
29083676 |
T |
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| Q |
190 |
gaaatggggattcgaggtttcaaaaag |
216 |
Q |
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| T |
29083675 |
gaaatggggattcgagattgcaaaaag |
29083649 |
T |
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