View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_low_19 (Length: 232)
Name: NF15007_low_19
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 28575395 - 28575183
Alignment:
| Q |
1 |
aatgataactaccaaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaataacaaagtctgttattgtgacatctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28575395 |
aatgataactaccaaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaatagcaaagtctgttattgtgacatctc |
28575296 |
T |
|
| Q |
101 |
agcagagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtg |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
28575295 |
agctgagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagtatcgcggggtg |
28575196 |
T |
|
| Q |
201 |
tggaggacttatc |
213 |
Q |
| |
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||||||||||||| |
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| T |
28575195 |
tggaggacttatc |
28575183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 16237049 - 16237261
Alignment:
| Q |
1 |
aatgataactaccaaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaataacaaagtctgttattgtgacatctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16237049 |
aatgataactaccaaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaatagcaaagtctgttattgtgacatctc |
16237148 |
T |
|
| Q |
101 |
agcagagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtg |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
16237149 |
agctgagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagtatcgcggggtg |
16237248 |
T |
|
| Q |
201 |
tggaggacttatc |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
16237249 |
tggaggacttatc |
16237261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 32714303 - 32714168
Alignment:
| Q |
1 |
aatgataactaccaaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaataacaaagtctgttattgtgacatctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32714303 |
aatgataactaccaaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaatagcaaagtctgttattgtgacatctc |
32714204 |
T |
|
| Q |
101 |
agcagagacatttggaggaagtgggatggaaggaac |
136 |
Q |
| |
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||| |||||||||||||||||||||||||||||||| |
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| T |
32714203 |
agctgagacatttggaggaagtgggatggaaggaac |
32714168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 160896 - 161093
Alignment:
| Q |
13 |
caaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaataacaaagtctgttattgtgacatctcagcagagacatt |
112 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||||| |||| ||||||||| | ||||| ||||| ||||| ||| |||||||||| || || || |
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| T |
160896 |
caaagacctttacatgctaaaa-tattattttgagttgtgttggtgattatcacattgcaacaacaaggtctgctataactacatctcagccgacacgtt |
160994 |
T |
|
| Q |
113 |
tggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtgtggaggacttat |
212 |
Q |
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| ||| | ||||||| ||||| || ||||| |||||||||||||| |||||||||| | || |||||||| |||||||| |||||||||||||||||| |
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|
| T |
160995 |
tagagaaggtgggattgaagggactgccgat-gggtgggtcaagattaatactgacgatgtttataaggatgatagtatcgcggggtgtggaggacttat |
161093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20633587 - 20633367
Alignment:
| Q |
1 |
aatgataactaccaaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaataacaaagtctgttattgtgacatctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |||| | ||||||||||||||||| |
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|
| T |
20633587 |
aatgataactaccaaagacctttacatgctaaaaatattattatgatttatgttaatgattatcacaatgctatagcaaaatttgttattgtgacatctc |
20633488 |
T |
|
| Q |
101 |
agcagagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20633487 |
agccgagacatttggaggaagtgggatggaaggaaccagcgattaggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgcggggtg |
20633388 |
T |
|
| Q |
201 |
tggaggacttatcacaggttc |
221 |
Q |
| |
|
|||||||||||||| |||||| |
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| T |
20633387 |
tggaggacttatcagaggttc |
20633367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 48823529 - 48823398
Alignment:
| Q |
90 |
tgtgacatctcagcagagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagt |
189 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48823529 |
tgtgacatctcagccaagacatttagaggaagtgggatggaaggaaccagcgattggatgggtcaagatcaatactgacggagcttgtaaggatggtagt |
48823430 |
T |
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| Q |
190 |
atcgtggggtgtggaggacttatcacaggttc |
221 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |
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|
| T |
48823429 |
atcgcggggtgtggaggacttatcagaggttc |
48823398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 38836081 - 38835871
Alignment:
| Q |
1 |
aatgataactaccaaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaataacaaagtctgttattgtgacatctc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | || |||||||||||||||||| ||||| |
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|
| T |
38836081 |
aatgacaactaccaaagacctttacatgctaaaaatattattatgagttatgttaattattatcacaatgtattagcaaagtctgttattgtgatatctc |
38835982 |
T |
|
| Q |
101 |
agcagagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtg |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |
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|
| T |
38835981 |
agccgagacatttggaggaagtgggatggaaggaaccactgattgcgtgggtcaagatcaatactaacgaagcttgtaaggatggtagtatcgcggggtg |
38835882 |
T |
|
| Q |
201 |
tggaggactta |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
38835881 |
tggaggactta |
38835871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 187
Target Start/End: Original strand, 18568483 - 18568670
Alignment:
| Q |
5 |
ataactaccaaagacctttacatgctaaaaatattattatgagttatgttaatgattatcataatgcaataacaaagtctgttattgt-------gacat |
97 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||||| ||||||||| ||||| |
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|
| T |
18568483 |
ataattaccaaacacctttacatgctaaaaatattatt--gagttatgttaacgattatcacaatgcaacaacaaagtttgttattgtgagttgtgacat |
18568580 |
T |
|
| Q |
98 |
ctcagcagagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggta |
187 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
18568581 |
ctcagccgagacatttggcggaagtgggatggaaggtaccaccaattgggtgggtcaagatcaatactaacgatgcttgtaaggatggta |
18568670 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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