View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15007_low_2 (Length: 640)

Name: NF15007_low_2
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15007_low_2
NF15007_low_2
[»] chr8 (33 HSPs)
chr8 (127-632)||(15796496-15797006)
chr8 (19-130)||(15797113-15797224)
chr8 (15-109)||(20301360-20301454)
chr8 (15-109)||(21087992-21088086)
chr8 (23-109)||(18004220-18004306)
chr8 (15-109)||(20094686-20094780)
chr8 (13-109)||(35682907-35683003)
chr8 (15-109)||(41790757-41790851)
chr8 (28-109)||(3157135-3157216)
chr8 (23-103)||(31197721-31197801)
chr8 (15-106)||(12688171-12688262)
chr8 (23-109)||(3157450-3157536)
chr8 (15-109)||(7669518-7669611)
chr8 (23-109)||(11232320-11232406)
chr8 (31-109)||(39052663-39052741)
chr8 (33-109)||(39960074-39960150)
chr8 (46-109)||(39052820-39052883)
chr8 (63-109)||(8084274-8084320)
chr8 (195-286)||(40634186-40634276)
chr8 (46-109)||(5589866-5589929)
chr8 (47-109)||(37868474-37868536)
chr8 (54-107)||(5675862-5675915)
chr8 (48-109)||(37867959-37868020)
chr8 (26-89)||(422364-422427)
chr8 (71-106)||(8715800-8715835)
chr8 (54-109)||(29005994-29006049)
chr8 (63-109)||(5675947-5675993)
chr8 (55-109)||(5932075-5932129)
chr8 (63-109)||(37868199-37868245)
chr8 (195-282)||(10623958-10624044)
chr8 (28-89)||(15042795-15042856)
chr8 (44-109)||(31079689-31079754)
chr8 (46-106)||(8716245-8716305)
[»] chr7 (24 HSPs)
chr7 (23-109)||(36277117-36277203)
chr7 (46-109)||(1596723-1596786)
chr7 (23-109)||(3519930-3520016)
chr7 (23-109)||(21861401-21861487)
chr7 (23-109)||(25620243-25620329)
chr7 (23-109)||(33834298-33834384)
chr7 (46-109)||(3519851-3519914)
chr7 (22-109)||(33996205-33996292)
chr7 (23-109)||(22574708-22574794)
chr7 (23-109)||(29469712-29469798)
chr7 (27-109)||(40746158-40746240)
chr7 (28-109)||(2315152-2315233)
chr7 (23-109)||(4886436-4886522)
chr7 (23-109)||(31485550-31485636)
chr7 (28-109)||(31892264-31892345)
chr7 (32-105)||(48661450-48661523)
chr7 (23-109)||(2404299-2404385)
chr7 (27-109)||(30727245-30727327)
chr7 (72-109)||(35308272-35308309)
chr7 (15-107)||(44874471-44874563)
chr7 (54-109)||(5871702-5871757)
chr7 (46-89)||(20305424-20305467)
chr7 (15-109)||(36993199-36993293)
chr7 (195-283)||(45804173-45804260)
[»] chr5 (29 HSPs)
chr5 (15-109)||(9368694-9368788)
chr5 (23-109)||(41666883-41666969)
chr5 (23-109)||(95392-95478)
chr5 (28-109)||(8081240-8081321)
chr5 (15-109)||(18333590-18333684)
chr5 (23-109)||(24269996-24270082)
chr5 (23-109)||(24346627-24346713)
chr5 (15-109)||(32908843-32908937)
chr5 (28-109)||(15590050-15590131)
chr5 (23-106)||(25258195-25258278)
chr5 (23-106)||(25321985-25322068)
chr5 (15-109)||(15480421-15480515)
chr5 (15-108)||(13700717-13700810)
chr5 (28-109)||(43117759-43117840)
chr5 (46-106)||(33337367-33337427)
chr5 (46-109)||(6919320-6919383)
chr5 (46-109)||(17016001-17016064)
chr5 (47-100)||(2062049-2062102)
chr5 (15-100)||(17150368-17150453)
chr5 (62-109)||(11896041-11896088)
chr5 (54-109)||(18885365-18885420)
chr5 (62-109)||(24531745-24531792)
chr5 (54-105)||(30770179-30770230)
chr5 (15-89)||(6413568-6413642)
chr5 (23-89)||(11896302-11896368)
chr5 (27-109)||(26137235-26137317)
chr5 (71-109)||(38731728-38731766)
chr5 (72-108)||(17352561-17352597)
chr5 (46-98)||(34327519-34327571)
[»] chr4 (18 HSPs)
chr4 (23-109)||(28245652-28245738)
chr4 (23-109)||(35788767-35788853)
chr4 (23-109)||(40717332-40717418)
chr4 (28-109)||(5398601-5398682)
chr4 (23-105)||(35819023-35819105)
chr4 (23-102)||(22231206-22231285)
chr4 (46-109)||(35796868-35796931)
chr4 (47-109)||(35645291-35645353)
chr4 (47-109)||(35645580-35645642)
chr4 (33-109)||(50543456-50543532)
chr4 (46-109)||(5398336-5398399)
chr4 (54-109)||(27634207-27634262)
chr4 (55-105)||(52559708-52559758)
chr4 (46-109)||(6778569-6778632)
chr4 (23-109)||(4645749-4645835)
chr4 (71-105)||(43743139-43743173)
chr4 (28-109)||(33107983-33108064)
chr4 (23-99)||(25324170-25324246)
[»] chr1 (25 HSPs)
chr1 (15-109)||(2859518-2859612)
chr1 (28-109)||(39348243-39348324)
chr1 (23-109)||(25713265-25713351)
chr1 (18-101)||(35772131-35772214)
chr1 (15-109)||(4098294-4098388)
chr1 (23-109)||(4112897-4112983)
chr1 (23-109)||(26177015-26177101)
chr1 (46-109)||(7307851-7307914)
chr1 (62-109)||(8870815-8870862)
chr1 (63-109)||(369779-369825)
chr1 (23-109)||(51460333-51460419)
chr1 (15-109)||(52961446-52961540)
chr1 (48-109)||(27413479-27413540)
chr1 (29-109)||(16163046-16163125)
chr1 (55-109)||(12325423-12325477)
chr1 (23-88)||(30369942-30370007)
chr1 (23-100)||(33156841-33156918)
chr1 (33-109)||(25145611-25145687)
chr1 (33-109)||(26173347-26173423)
chr1 (62-109)||(12376564-12376611)
chr1 (63-109)||(768971-769017)
chr1 (47-109)||(7653372-7653434)
chr1 (63-109)||(39100493-39100539)
chr1 (195-283)||(31771618-31771706)
chr1 (64-109)||(51459956-51460000)
[»] scaffold0692 (1 HSPs)
scaffold0692 (23-109)||(5645-5731)
[»] chr6 (14 HSPs)
chr6 (23-109)||(4868703-4868789)
chr6 (23-109)||(13353308-13353394)
chr6 (23-109)||(33796433-33796519)
chr6 (29-109)||(6400746-6400826)
chr6 (23-109)||(12330070-12330156)
chr6 (19-105)||(17147790-17147876)
chr6 (23-109)||(33494646-33494732)
chr6 (27-109)||(9705132-9705212)
chr6 (46-90)||(6237617-6237661)
chr6 (13-109)||(32290825-32290921)
chr6 (46-109)||(3680142-3680205)
chr6 (193-283)||(13704713-13704804)
chr6 (54-109)||(33631696-33631751)
chr6 (23-109)||(31961050-31961136)
[»] chr2 (18 HSPs)
chr2 (23-109)||(2029876-2029962)
chr2 (23-109)||(5711565-5711651)
chr2 (46-109)||(14466301-14466364)
chr2 (23-109)||(16419374-16419460)
chr2 (15-109)||(16533411-16533505)
chr2 (23-109)||(17525225-17525311)
chr2 (15-109)||(40149127-40149221)
chr2 (31-109)||(40379335-40379413)
chr2 (23-109)||(37812394-37812480)
chr2 (23-109)||(93245-93331)
chr2 (46-109)||(33606180-33606243)
chr2 (195-283)||(5596512-5596599)
chr2 (23-109)||(18607135-18607221)
chr2 (71-109)||(33381079-33381117)
chr2 (23-89)||(34893532-34893598)
chr2 (54-109)||(44404052-44404107)
chr2 (15-89)||(30701169-30701243)
chr2 (54-102)||(19981908-19981956)
[»] chr3 (18 HSPs)
chr3 (23-109)||(20327740-20327826)
chr3 (23-109)||(35038320-35038405)
chr3 (28-109)||(4155436-4155517)
chr3 (23-108)||(20303277-20303362)
chr3 (28-109)||(34992718-34992799)
chr3 (23-109)||(13574811-13574897)
chr3 (15-109)||(19954343-19954437)
chr3 (23-109)||(20303190-20303276)
chr3 (55-109)||(31317370-31317424)
chr3 (41-109)||(39683394-39683462)
chr3 (23-109)||(16239699-16239785)
chr3 (195-283)||(20175900-20175987)
chr3 (46-109)||(22729623-22729686)
chr3 (71-109)||(29215714-29215752)
chr3 (55-109)||(39269213-39269267)
chr3 (195-286)||(29517801-29517891)
chr3 (15-109)||(52724112-52724206)
chr3 (72-109)||(21808838-21808875)
[»] scaffold0519 (1 HSPs)
scaffold0519 (23-109)||(2023-2109)
[»] scaffold0729 (1 HSPs)
scaffold0729 (46-109)||(2624-2687)
[»] scaffold0366 (2 HSPs)
scaffold0366 (54-109)||(14543-14598)
scaffold0366 (63-109)||(10886-10932)
[»] scaffold0048 (1 HSPs)
scaffold0048 (62-109)||(81987-82034)
[»] scaffold0459 (1 HSPs)
scaffold0459 (63-109)||(13245-13291)
[»] scaffold0047 (1 HSPs)
scaffold0047 (28-104)||(12759-12835)


Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 127 - 632
Target Start/End: Complemental strand, 15797006 - 15796496
Alignment:
Q  127 tgagttgaataaaattaattttgatccttcctaaaacagtttgaaaagtcacattatcacaaacggaattttctttttctcttcttaaaaacgttttcta 226  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15797006 tgagttgaataaaatgaattttgatccttcctaaaacagtttgaaaagtcacattatcacaaacggaattttctttttctcttcttaaaaacgttttcta 15796907  T
Q  227 aaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaacagacctaataacttataaagacannnnnnngttcagaaaagagga 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       |||||||||||||||    
T  15796906 aaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaacaaacctaataacttataaagacatttttt-gttcagaaaagagga 15796808  T
Q  327 tttatgtctagggaagtagtaacaattatatgaaattaacacttacaatgtcattcttttaatgcacttcaatgataaagcacgaccttatgatgatgca 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15796807 tttatgtctagggaagtagtaacaattatatgaaattaacacttacaatgtcattcttttaatgcacttcaatgataaagcacgaccttatgatgatgca 15796708  T
Q  427 gagaaccttggttgcatgtttccgtccaaagaaagataaaaaggcgtcgttttaatcaggcaaataggattcagagtttaatgcaaaata----gttact 522  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||| |    
T  15796707 gagaaccttggttgcatgtttccgtccaaagaaagataaaacggcgtcgttttaatcaggcaaataggattcagagtttaatgcaaaatagttagttagt 15796608  T
Q  523 taaagtgaatg--nnnnnnnnnnngaaggaagtcaaagtgaatggttataatttccaaagtttgtaatttaacagctaattttatttacccggttggaca 620  Q
    |||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15796607 taaagtgaatgtttatttttttttgaaggaagtcaaattgaatggttataatttccaaagtttgtaatttaacagctaattttatttacccggttggaca 15796508  T
Q  621 agttaaggagaa 632  Q
    ||||||||||||    
T  15796507 agttaaggagaa 15796496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 15797224 - 15797113
Alignment:
Q  19 caacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtgcacaatgtg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15797224 caacatccgttgggccaccttccatcgggtttcctctatcggcccatccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgcacaatgtg 15797125  T
Q  119 tttataagtgag 130  Q
    ||||||||||||    
T  15797124 tttataagtgag 15797113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 20301360 - 20301454
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  20301360 tcttcaagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgctggtcgtg 20301454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 21087992 - 21088086
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  21087992 tcttcaagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgctggtcgtg 21088086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 18004306 - 18004220
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| || ||||||||||||||||    
T  18004306 atccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcctaatagtgctggtcgtg 18004220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 20094780 - 20094686
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||||| | ||| ||||| | ||||| | |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  20094780 tcttcaagatccattgggccacctcctatcaggttttcgctatcaggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 20094686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 35683003 - 35682907
Alignment:
Q  13 catcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||| ||| |||| ||||||||||| | ||  ||||||| ||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||    
T  35683003 catctccaagatccattgggccacctgctattaggtttccgctatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtg 35682907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 41790757 - 41790851
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||||| | ||| ||||||| ||||||  |||||||| ||||||||||| ||||||| ||||| |||||||||||||    
T  41790757 tcttcaagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatgtccatgaaccaagcccaagagtgctggtcgtg 41790851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 3157216 - 3157135
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| |||||| | ||| ||||||| |||||||  ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  3157216 ttggaccacctgctatcaggtttccgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 3157135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 31197721 - 31197801
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctg 103  Q
    |||| ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| | |||||||||||    
T  31197721 atccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagctcaatagtgctg 31197801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 12688171 - 12688262
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtc 106  Q
    ||||||| |||| ||||||||||| | ||| |||||| ||||| || |||||||| |||||||||||||||| || |||||||||| |||||    
T  12688171 tcttcaagatccattgggccacctgctatcaggtttcttctattgggccacccaccatttatgtccacgaactaagcccaatagtgatggtc 12688262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 3157536 - 3157450
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| |||| |||||| | ||| ||||| | |||||||  ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  3157536 atccattggaccacctgctatcaggttttcgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 3157450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 7669518 - 7669611
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||| ||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| | | |||||||||||||||    
T  7669518 tcttcaagatccattgagccacctgctatcaggtttccactatcggaccacccaccatttatgtccacgaaccaagctc-atagtgctggtcgtg 7669611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 11232406 - 11232320
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| |||||||||||   ||| ||||||| ||||||   ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  11232406 atccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 11232320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 39052741 - 39052663
Alignment:
Q  31 ggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||| | ||| ||||||| ||||| | |||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  39052741 ggccacctgctatcaggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtg 39052663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 39960074 - 39960150
Alignment:
Q  33 ccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| | ||| ||||||| ||||||  | |||||| ||||||||||||||||||| |||||||||||||||||||    
T  39960074 ccacctgctatcaggtttccgctatcgagctacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 39960150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 39052883 - 39052820
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||| | |||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  39052883 ggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtg 39052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 8084274 - 8084320
Alignment:
Q  63 cacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  8084274 cacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 8084320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 40634276 - 40634186
Alignment:
Q  195 ttttctttttctcttcttaaaaacg-ttttctaaaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaacagacc 286  Q
    |||||||||||||||||| ||| |  ||||||||||||||||| ||  ||||||||||| |||| ||||  |||||| |||||||||||||||    
T  40634276 ttttctttttctcttcttgaaatcacttttctaaaattgattttta--aaacatattttaaaaattaaaaacaaaaagtgttccaaacagacc 40634186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 5589929 - 5589866
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||||||  ||||||| ||||||||||||||||||| ||||||| |||| ||||||    
T  5589929 ggtttccgctatcggatcacccacaatttatgtccacgaaccaagcccaataatgctagtcgtg 5589866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 37868536 - 37868474
Alignment:
Q  47 gtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| |||| || |||||||| |||||||| |||||||||| ||||||| |||||||||||    
T  37868536 gtttccgctattgggccacccaccatttatgtacacgaaccaagcccaatattgctggtcgtg 37868474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 5675915 - 5675862
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcg 107  Q
    |||||||  ||||||| |||||||||||||||||||  ||||||||||||||||    
T  5675915 ctatcgggtcacccaccatttatgtccacgaaccaagtccaatagtgctggtcg 5675862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 37868020 - 37867959
Alignment:
Q  48 tttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||| |||| || |||||||| |||||||||||||||||||  ||||||||| ||||||||    
T  37868020 tttccgctattgggccacccaccatttatgtccacgaaccaaggccaatagtgttggtcgtg 37867959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 422427 - 422364
Alignment:
Q  26 cgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaa 89  Q
    ||||||||||||| | ||| ||||||| || |||| |||||||| |||| ||||||||||||||    
T  422427 cgttgggccacctgctatcaggtttccgctctcgggccacccaccatttttgtccacgaaccaa 422364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 8715800 - 8715835
Alignment:
Q  71 atttatgtccacgaaccaaacccaatagtgctggtc 106  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8715800 atttatgtccaggaaccaaacccaatagtgctggtc 8715835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 29005994 - 29006049
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||||||| ||||||||||| || | || |||||||||||||||||||    
T  29005994 ctatcgggccacccaccatttatgtccatgagcgaagcccaatagtgctggtcgtg 29006049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 5675993 - 5675947
Alignment:
Q  63 cacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||||| ||||||||| ||||||| |||||||||||    
T  5675993 cacccaccatttatgtctacgaaccaagcccaatactgctggtcgtg 5675947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 5932129 - 5932075
Alignment:
Q  55 tatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| |||||||| ||||||||| || |||||| | |||||||||||||||||    
T  5932129 tatcgggccacccaccatttatgtcgacaaaccaagcgcaatagtgctggtcgtg 5932075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 37868245 - 37868199
Alignment:
Q  63 cacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||||||||||||| |||| |||||||||| ||||||||    
T  37868245 cacccaccatttatgtccacgagccaagcccaatagtgttggtcgtg 37868199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 10624044 - 10623958
Alignment:
Q  195 ttttctttttctcttcttaaaaacg-ttttctaaaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaaca 282  Q
    ||||||||| |||||||||||| |  ||||||||||||  ||| ||  ||||||||||| |||||||||  |||||| |||||||||||    
T  10624044 ttttcttttactcttcttaaaatcccttttctaaaattagttttta--aaacatattttgaaaactaaaaacaaaaagtgttccaaaca 10623958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 15042856 - 15042795
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaa 89  Q
    ||||||||||| | ||| ||||||| ||||| | ||||||||  ||||||||||||||||||    
T  15042856 ttgggccacctgctatcaggtttccgctatcaggccacccaccgtttatgtccacgaaccaa 15042795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 31079754 - 31079689
Alignment:
Q  44 cgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| | ||||||| ||| |||  ||||||||||||||||||| |||||||| | ||||||||    
T  31079754 cgggttttcactatcgggccatccatcatttatgtccacgaaccaagcccaatagggatggtcgtg 31079689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 8716245 - 8716305
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtc 106  Q
    ||||||| |||||||  |||| || |||||||||||||||| ||||| |||| ||||||||    
T  8716245 ggtttccgctatcgggtcaccgaccatttatgtccacgaacaaaacctaatactgctggtc 8716305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 36277203 - 36277117
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  36277203 atccattgggccacctactatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 36277117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 1596723 - 1596786
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  1596723 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 1596786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 3520016 - 3519930
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||| | |||||||  ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  3520016 atccattgggccacctgctatctggttttcgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 3519930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 21861401 - 21861487
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| |||||||||||   ||| ||||||| ||||||| |||||||| ||||||||||||||||||| || ||||||||||||||||    
T  21861401 atccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcctaatagtgctggtcgtg 21861487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 25620243 - 25620329
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| |||| || |||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  25620243 atccattgggccacctgctatcaggtttccgctattgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtg 25620329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 33834298 - 33834384
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||| | ||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  33834298 atccattgggccacctgctatcaggttttccctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtg 33834384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 3519914 - 3519851
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  3519914 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaataatgctggtcgtg 3519851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 33996292 - 33996205
Alignment:
Q  22 catccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||| ||||||||||| | ||| ||||||| | ||||| |||||||| ||||||||||||||||||| |||||||||| || |||||    
T  33996292 catccattgggccacctgctatcaggtttccgcaatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttgatcgtg 33996205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 22574708 - 22574794
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||  ||||||| |||||||| ||||||||| ||||||||| |||||||||| ||||||||    
T  22574708 atccattgggccacctgctatcaggtttcagctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgttggtcgtg 22574794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 29469712 - 29469798
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| |||||||||||   ||| || |||| ||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  29469712 atccattgggccacctgttatcaggcttccgctatcgggccacccaccatttatgtccacgaatcaagcccaatagtgctggtcgtg 29469798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 40746240 - 40746158
Alignment:
Q  27 gttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||||| | ||| ||||| |  |||||  |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  40746240 gttgggccacctgctatcaggttttcgttatcgaaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 40746158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 2315233 - 2315152
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | ||| | ||||| | ||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  2315233 ttgggccacctgctatcagatttccgcaatcggaccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtg 2315152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 4886436 - 4886522
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | |||  |||||  ||||||  |||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  4886436 atccattgggccacctgctatcaagtttctactatcgagccacccaccatttatgtccacgaaccaagcccaatagtactggtcgtg 4886522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 31485636 - 31485550
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||| | ||||||| |||||||| |||||| |||||||| |||||||||||||| || |||||    
T  31485636 atccattgggccacctactatcaggttttcactatcgggccacccaccatttatatccacgaatcaaacccaatagtgttgttcgtg 31485550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 31892264 - 31892345
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | ||| |||||||  |||| | |||||||| ||||||||||||||||||| ||||||| || ||||||||    
T  31892264 ttgggccacctgctatcaggtttccgttatcaggccacccaccatttatgtccacgaaccaagcccaataatgatggtcgtg 31892345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 48661523 - 48661450
Alignment:
Q  32 gccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggt 105  Q
    ||||||| | ||| ||||||| || |||| |||||||| ||||||||||||||||||| |||||||||| ||||    
T  48661523 gccacctgctatcaggtttccgctttcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggt 48661450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 2404385 - 2404299
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||| ||||| | ||| ||||||| |||| || ||||| ||  |||||||||||||||||| | |||||||||||||||||    
T  2404385 atccattgggtcacctgctatcaggtttccgctattggaccacctaccgtttatgtccacgaaccaagcgcaatagtgctggtcgtg 2404299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 30727327 - 30727245
Alignment:
Q  27 gttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||||||| ||| ||||||| |||| || |||||||| |||||| ||||| ||| || |||||||||| ||| ||||    
T  30727327 gttgggccaccttctatcaggtttccgctattgggccacccaccatttatatccacaaactaagcccaatagtgttgggcgtg 30727245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 35308309 - 35308272
Alignment:
Q  72 tttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||||||||||| |||||||||||||||||||    
T  35308309 tttatgtccacgaaccaagcccaatagtgctggtcgtg 35308272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 44874563 - 44874471
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcg 107  Q
    ||||||| |||| ||||| ||||| | ||| ||||||| | |||||  ||||||  ||||||||| ||||||||||||||||| | |||||||    
T  44874563 tcttcaagatccattgggtcacctgctatcaggtttccacaatcgggtcacccatcatttatgtctacgaaccaaacccaataatactggtcg 44874471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 5871757 - 5871702
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| | ||| || ||||||||| ||||||||||| |||||||||||||||||    
T  5871757 ctatcggacgacctaccatttatgtcaacgaaccaaactcaatagtgctggtcgtg 5871702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 20305424 - 20305467
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaa 89  Q
    ||||||| ||||||| |||||||| |||||||||||||||||||    
T  20305424 ggtttccgctatcgggccacccaccatttatgtccacgaaccaa 20305467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 36993293 - 36993199
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||| | | ||| | ||||| |||| || |||||||| |||||||| |||||| |||   |||||||||||||||||    
T  36993293 tcttcaagatccattgggccacgtgctatcagatttccgctattggaccacccactatttatgttcacgaatcaagttcaatagtgctggtcgtg 36993199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 45804260 - 45804173
Alignment:
Q  195 ttttctttttctcttcttaaaaacg-ttttctaaaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaacag 283  Q
    ||||| ||||||||| |||||| |  ||||||||||||||||| ||  ||||||||||| |||||||||  |||||| |||| |||||||    
T  45804260 ttttccttttctcttattaaaatcacttttctaaaattgattttta--aaacatattttaaaaactaaaaacaaaaagtgtttcaaacag 45804173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 9368694 - 9368788
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||||| | ||| ||||||| |||| || |||||||| || ||||||||||||||||||||||||||||||||||||    
T  9368694 tcttcaagatccattgggccacctgctatcaggtttccgctattggaccacccaccatgtatgtccacgaaccaaacccaatagtgctggtcgtg 9368788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 41666969 - 41666883
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||||||||| | ||| |||||||  |||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  41666969 atccgttgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 41666883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 95478 - 95392
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| | ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  95478 atccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 95392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 8081321 - 8081240
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | ||| ||| ||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  8081321 ttgggccacctgctatcaggtatcccctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 8081240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 18333684 - 18333590
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| | ||||||||| | ||| ||||| | ||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||    
T  18333684 tcttcaagatccatcgggccacctgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaagcccattagtgctggtcgtg 18333590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 24270082 - 24269996
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| |||||||  |||||| |||||||| ||||||||||||||||||| | |||||||||||||||||    
T  24270082 atccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtg 24269996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 24346713 - 24346627
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| |||||||  |||||| |||||||| ||||||||||||||||||| | |||||||||||||||||    
T  24346713 atccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtg 24346627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 32908937 - 32908843
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| |||||||| || | ||| ||||||  |||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  32908937 tcttcaagatccattgggccatctgctatcaggtttctgctatcgggtcacccaccatttatgtcaacgaaccaaacccaatagtgctggtcgtg 32908843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 15590050 - 15590131
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | |||  |||||| ||||||| | || ||| |||||||||||||||||||||||||||||||||||||||    
T  15590050 ttgggccacctgctatcaagtttccgctatcgggctactcaccatttatgtccacgaaccaaacccaatagtgctggtcgtg 15590131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 25258278 - 25258195
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtc 106  Q
    |||| ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| || |||| ||||||||    
T  25258278 atccattgggccacctgctatcaggtttccgctatcggaccacccacaatttatgtccacgaaccaagccaaataatgctggtc 25258195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 25322068 - 25321985
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtc 106  Q
    |||| ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| || |||| ||||||||    
T  25322068 atccattgggccacctgctatcaggtttccgctatcggaccacccacaatttatgtccacgaaccaagccaaataatgctggtc 25321985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 15480421 - 15480515
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||||| | ||| ||||||| |||| || |||||||| ||||||||||| ||||||| || ||| ||||||||||||    
T  15480421 tcttcaagatccattgggccacctgctatcaggtttccgctattgggccacccaccatttatgtccatgaaccaagcctaatcgtgctggtcgtg 15480515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 13700810 - 13700717
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgt 108  Q
    ||||||| |||| ||||| ||||| | ||| ||||||| ||||| | |||||||| |||||||  ||||||||||||||||||||| |||||||    
T  13700810 tcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacccaccatttatgatcacgaaccaaacccaatagtgttggtcgt 13700717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 43117759 - 43117840
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | ||| ||||||| ||||||| |||||||  ||||||||||||||||||| | |||||||| ||||||||    
T  43117759 ttgggccacctgctatcaggtttccgctatcggaccacccatcatttatgtccacgaaccaagctcaatagtgttggtcgtg 43117840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 33337427 - 33337367
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtc 106  Q
    ||||||| | ||||| |||||||| ||||||||||||||||||| ||||||||||||||||    
T  33337427 ggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtc 33337367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 6919383 - 6919320
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| || |||| |||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  6919383 ggtttccgctttcggaccactcaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 6919320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 17016064 - 17016001
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||| |||||||| |||||||||||||||||||  ||||||||| ||||||||    
T  17016064 ggtttccgctatcggaccacccaccatttatgtccacgaaccaagtccaatagtgttggtcgtg 17016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 2062102 - 2062049
Alignment:
Q  47 gtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtg 100  Q
    |||||| ||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  2062102 gtttccgctatcgggccatccaccatttatgtccacgaaccaaacccaatagtg 2062049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 17150453 - 17150368
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtg 100  Q
    ||||||| |||| ||||||||||| | ||| ||||||| ||||||| |||||||| |||||||||||  ||||||  |||||||||    
T  17150453 tcttcaagatccattgggccacctactatcaggtttccgctatcgggccacccaccatttatgtccagaaaccaataccaatagtg 17150368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 11896088 - 11896041
Alignment:
Q  62 ccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  11896088 ccacccaccatttatgtccgcgaaccaaacccaatagtgatggtcgtg 11896041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 18885365 - 18885420
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||||||| ||||||||| | ||||||| |||||||||||||||||||    
T  18885365 ctatcggaccacccaccatttatgtctatgaaccaagcccaatagtgctggtcgtg 18885420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 24531745 - 24531792
Alignment:
Q  62 ccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||    
T  24531745 ccacccaacatttatgtccacgaaccaagcccaatagtgctggtcgtg 24531792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 30770230 - 30770179
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggt 105  Q
    ||||||| |||||||| ||||||||||||||||||| |||||||| ||||||    
T  30770230 ctatcgggccacccaccatttatgtccacgaaccaagcccaatagcgctggt 30770179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 6413642 - 6413568
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaa 89  Q
    ||||||| |||| ||||||||||| | ||| ||| ||| ||||||  |||||||| |||||||||||||||||||    
T  6413642 tcttcaagatccattgggccacctgctatcaggtatccactatcgagccacccaccatttatgtccacgaaccaa 6413568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 11896368 - 11896302
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaa 89  Q
    |||| ||| ||||||| | ||| ||||||| ||||||| |||||||| |||||||||||||||||||    
T  11896368 atccattgtgccacctactatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaa 11896302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 26137317 - 26137235
Alignment:
Q  27 gttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||||| | ||| ||||| | | ||||| |||||||  |||||||||||||||||||  |||||| |||| ||||||    
T  26137317 gttgggccacctgctatcaggttttcaccatcgggccacccatcatttatgtccacgaaccaagtccaataatgctagtcgtg 26137235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 38731766 - 38731728
Alignment:
Q  71 atttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  38731766 atttatgtccatgaaccaagcccaatagtgctggtcgtg 38731728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 17352597 - 17352561
Alignment:
Q  72 tttatgtccacgaaccaaacccaatagtgctggtcgt 108  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  17352597 tttatgtccacgaaccaagcccaataatgctggtcgt 17352561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 34327519 - 34327571
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatag 98  Q
    ||||||| ||||||   ||||||| ||||||||||||||||||||| ||||||    
T  34327519 ggtttccactatcgagtcacccaccatttatgtccacgaaccaaactcaatag 34327571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 28245738 - 28245652
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  28245738 atccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 28245652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 35788767 - 35788853
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||||||||| | ||| |||||||  |||| | |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  35788767 atccgttgggccacctgctatcaggtttccgttatcaggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 35788853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 40717418 - 40717332
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| ||||| ||||||| ||||||| |||||||| |||||||||||| |||||| || ||||||||||||||||    
T  40717418 atccattgggccacctgccatcaggtttccgctatcggaccacccaccatttatgtccacaaaccaagcctaatagtgctggtcgtg 40717332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 5398682 - 5398601
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| || ||||||||||||||||    
T  5398682 ttgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagccaaatagtgctggtcgtg 5398601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 35819105 - 35819023
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggt 105  Q
    |||| ||||||||||| | ||| ||||||| |||||||  ||||||| ||||||||||||||||||| |||||||||||||||    
T  35819105 atccattgggccacctgctatcaggtttccgctatcgggtcacccaccatttatgtccacgaaccaagcccaatagtgctggt 35819023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 22231285 - 22231206
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgct 102  Q
    |||| ||||||||||| | ||| ||||||| ||||||| ||||| || ||||||||||||||||||| ||||||||||||    
T  22231285 atccattgggccacctgctatcaggtttccgctatcgggccacctaccatttatgtccacgaaccaagcccaatagtgct 22231206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 35796931 - 35796868
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||| |||||||| |||||| |||||||||||| |||||||||||||||||||    
T  35796931 ggtttccgctatcgggccacccaccatttatctccacgaaccaagcccaatagtgctggtcgtg 35796868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 35645353 - 35645291
Alignment:
Q  47 gtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| ||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||    
T  35645353 gtttccgctatcgggccacccgccatttatgtccacgaaccaaacccaattgtgctggtcgtg 35645291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 35645642 - 35645580
Alignment:
Q  47 gtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| ||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||    
T  35645642 gtttccgctatcgggccacccgccatttatgtccacgaaccaaacccaattgtgctggtcgtg 35645580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 50543532 - 50543456
Alignment:
Q  33 ccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| | ||| |||||||  |||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  50543532 ccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtg 50543456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 5398399 - 5398336
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||| ||||||| || ||||||||    
T  5398399 ggtttcccctatcggaccacccaccatttatgtccacgaaccaagcccaataatgttggtcgtg 5398336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 27634262 - 27634207
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||||  |||||||||||||||||| |||||||||||||||||||    
T  27634262 ctatcggaccacccactgtttatgtccacgaaccaagcccaatagtgctggtcgtg 27634207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 52559708 - 52559758
Alignment:
Q  55 tatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggt 105  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||||||||    
T  52559708 tatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggt 52559758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 6778632 - 6778569
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||| |||||| | ||||||||| |||||||||||| |||||||||| |||||    
T  6778632 ggtttccgctatcgggccaccccccatttatgtctacgaaccaaacctaatagtgctgatcgtg 6778569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 4645749 - 4645835
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||| ||||| | ||| ||||||| ||||||| |||||||| | ||||||||||||| ||| ||||| |||| ||||||||    
T  4645749 atccattgggtcacctgctatcaggtttccgctatcgggccacccaccaattatgtccacgaatcaagcccaaaagtgttggtcgtg 4645835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 43743139 - 43743173
Alignment:
Q  71 atttatgtccacgaaccaaacccaatagtgctggt 105  Q
    ||||||||||||||||||||||||||| |||||||    
T  43743139 atttatgtccacgaaccaaacccaataatgctggt 43743173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 33107983 - 33108064
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | ||  |||||||  |||||| |||||||| |||||||||||| |||||||  ||||| || ||||||||    
T  33107983 ttgggccacctgctataaggtttccgttatcggaccacccaccatttatgtccactaaccaaatacaataatgttggtcgtg 33108064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 25324246 - 25324170
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagt 99  Q
    |||| ||||||||||| | |||  |||||| ||||||| |||||||| |||||| || ||| ||||| |||||||||    
T  25324246 atccattgggccacctgctatcaagtttccgctatcgggccacccaccatttatatctacgcaccaagcccaatagt 25324170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 2859612 - 2859518
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||||||| ||  ||||||  ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  2859612 tcttcaagatccattgggccaccttctattaggtttctgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 2859518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 39348324 - 39348243
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  39348324 ttgggccacctgctatcaggtttccactatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 39348243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 25713265 - 25713351
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | |||  |||||| ||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  25713265 atccattgggccacctgctatcaagtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtg 25713351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 35772131 - 35772214
Alignment:
Q  18 tcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgc 101  Q
    |||| |||| |||||||| || | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  35772131 tcaagatccattgggccatctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgc 35772214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 4098388 - 4098294
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||||| | ||| ||||||  ||||||| ||||||||  |||||||||||||||||| ||||||| || ||||||||    
T  4098388 tcttcaagatccattgggccacctgcaatcaggtttctgctatcgggccacccaccctttatgtccacgaaccaagcccaataatgttggtcgtg 4098294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 4112983 - 4112897
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||| |||||| || ||| ||||||| |||| || |||||||| ||||||||||||||||||| | |||||||||||||||||    
T  4112983 atccattgagccaccatctatcaggtttccgctattggaccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtg 4112897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 26177015 - 26177101
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| | ||||| ||||||| |||||||| |||||| ||||||||||||  ||||||||||||||||||    
T  26177015 atccattgggccacctgctatcagatttccgctatcggaccacccaccatttatatccacgaaccaagtccaatagtgctggtcgtg 26177101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 7307851 - 7307914
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| || |||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  7307851 ggtttccgctattggaccacccaccatttatgtccacgaaccaaatccaatagtgttggtcgtg 7307914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 8870862 - 8870815
Alignment:
Q  62 ccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  8870862 ccacccaccatttatgtccacgaaccaaacccaattgtgctggtcgtg 8870815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 369779 - 369825
Alignment:
Q  63 cacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  369779 cacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 369825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 51460419 - 51460333
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| ||||||| | |||||| |||| |||||||||||||||| |||| ||||| ||||||    
T  51460419 atccattgggccacctgctatcaggtttccgctatcgggcgacccaccatttgtgtccacgaaccaaactcaattgtgctagtcgtg 51460333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 52961446 - 52961540
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||||||||| | ||| ||||||| ||||||| |||||||| | |||||| |||||| ||| | |||||||||| ||||||    
T  52961446 tcttcaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccagttatgtacacgaaacaagctcaatagtgctagtcgtg 52961540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 27413479 - 27413540
Alignment:
Q  48 tttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||| ||||||| |||||||| ||||||||||||||| ||| |||||||||| ||||||||    
T  27413479 tttccgctatcgggccacccaccatttatgtccacgaatcaagcccaatagtgttggtcgtg 27413540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 16163046 - 16163125
Alignment:
Q  29 tgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||| | ||| ||||||| ||||||| ||||| || |||||||||||||| |||| ||| |||||||||||||||    
T  16163046 tgggccacctgctatcaggtttccgctatcgggccacctaccatttatgtccacgagccaagccc-atagtgctggtcgtg 16163125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 12325477 - 12325423
Alignment:
Q  55 tatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| ||||| || ||||||||||||||||||| |||||||||| ||||||||    
T  12325477 tatcgggccacctaccatttatgtccacgaaccaagcccaatagtgttggtcgtg 12325423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 30369942 - 30370007
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaacca 88  Q
    |||| ||||| ||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||    
T  30369942 atccattgggtcacctgctatcaggtttccactatcgggccacccaccatttatgtccacgaacca 30370007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 33156841 - 33156918
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtg 100  Q
    |||||||||  ||||| | ||| ||||||| ||||||| ||| |||| ||||||||||||||| ||| ||||||||||    
T  33156841 atccgttggttcacctgctatcaggtttccgctatcgggccatccaccatttatgtccacgaatcaagcccaatagtg 33156918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 25145687 - 25145611
Alignment:
Q  33 ccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| | ||| |||||||  |||||| |||||||| ||| ||||||||||| ||| | |||||||||||||||||    
T  25145687 ccacctgctatcaggtttccgttatcggaccacccaccattaatgtccacgaatcaagctcaatagtgctggtcgtg 25145611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 26173423 - 26173347
Alignment:
Q  33 ccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| | ||| ||||||| ||||||| || ||||| |||||||||||||||| || | |||| ||||||||||||    
T  26173423 ccacctgctatcaggtttccgctatcggaccccccaccatttatgtccacgaactaagctcaattgtgctggtcgtg 26173347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 12376611 - 12376564
Alignment:
Q  62 ccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||| || ||||||||||||||||||| |||||||||| ||||||||    
T  12376611 ccacctaccatttatgtccacgaaccaagcccaatagtgttggtcgtg 12376564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 768971 - 769017
Alignment:
Q  63 cacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||||||||||| |||| ||||||||||| ||||||    
T  768971 cacccaccatttatgtccacgaatcaaatccaatagtgctagtcgtg 769017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 7653372 - 7653434
Alignment:
Q  47 gtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| |||||||  || |||| |||||||| |||||||||||| |||||||| ||||||||    
T  7653372 gtttccactatcggggcatccaccatttatgtacacgaaccaaacgcaatagtgttggtcgtg 7653434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 39100493 - 39100539
Alignment:
Q  63 cacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||||||||||| ||||||||||||  |||||||||    
T  39100493 cacccactatttatgtccacgaatcaaacccaatagaactggtcgtg 39100539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 31771706 - 31771618
Alignment:
Q  195 ttttctttttctcttcttaaaaacg-ttttctaaaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaacag 283  Q
    |||||||||||||||||| ||| |  ||||||||||||  ||| || |||||| ||||| |||||||||  |||||| ||||||||||||    
T  31771706 ttttctttttctcttcttgaaatcccttttctaaaattagttttta-aaaacacattttgaaaactaaaaacaaaaagtgttccaaacag 31771618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 51460000 - 51459956
Alignment:
Q  64 acccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| |||||||||||||||| ||||||||| ||||||||||||    
T  51460000 acccaccatttatgtccacgaac-aaacccaattgtgctggtcgtg 51459956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 5731 - 5645
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||| ||||||| | ||| ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  5731 atccattgagccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 5645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 4868789 - 4868703
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||| |||||||||| | ||| |||||||  |||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  4868789 atccgctgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 4868703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 13353308 - 13353394
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| |||||||||||   ||| ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  13353308 atccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 13353394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 33796433 - 33796519
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| |||||||||||   ||| ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  33796433 atccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 33796519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 6400826 - 6400746
Alignment:
Q  29 tgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||| | ||| ||||||  ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  6400826 tgggtcacctgctatcaggtttctgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 6400746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 12330156 - 12330070
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| | ||||| |||||||| ||||||||||||||||||| ||||||  |||||||||||    
T  12330156 atccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaattatgctggtcgtg 12330070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 17147876 - 17147790
Alignment:
Q  19 caacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggt 105  Q
    |||||||| ||||| ||||| | ||| ||||||| ||||| |  ||||||| ||||||||||||||||||| |||||||||||||||    
T  17147876 caacatccattgggtcacctgctatcaggtttccgctatcaggtcacccaccatttatgtccacgaaccaagcccaatagtgctggt 17147790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 33494646 - 33494732
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||| ||||| | ||| ||||||| ||||||| ||||||||  ||||||| |||||||||| |||||||||||||||||||    
T  33494646 atccattgggtcacctgctatcaggtttccactatcgggccacccaccgtttatgttcacgaaccaagcccaatagtgctggtcgtg 33494732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 9705132 - 9705212
Alignment:
Q  27 gttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||||| | ||| |||||||  |||||| |||||||| |||||||||||  ||||||  ||||||||||||||||||    
T  9705132 gttgggccacctgctatcaggtttccattatcgggccacccaccatttatgtcca--aaccaagtccaatagtgctggtcgtg 9705212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 6237661 - 6237617
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaa 90  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||||    
T  6237661 ggtttccgctatcggaccacccaccatttatgtccacgaaccaaa 6237617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 32290825 - 32290921
Alignment:
Q  13 catcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||| ||| |||| | ||||||||| | ||| | ||| | ||||||| |||||||| |||||||||||| || ||| ||||||| |||||||||||    
T  32290825 catctccaatatccatcgggccacctactatcagattttcgctatcgggccacccaccatttatgtccacaaatcaagcccaataatgctggtcgtg 32290921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 3680142 - 3680205
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||||||  || |||| |||||||||||| |||||| |||||||||| ||||||||    
T  3680142 ggtttccgctatcgggtcatccaccatttatgtccacaaaccaagcccaatagtgttggtcgtg 3680205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 13704804 - 13704713
Alignment:
Q  193 aattttctttttctct--tcttaaaaac-gttttctaaaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaacag 283  Q
    ||||||||||||||||  |||| ||||| |||||||||||  ||||||||  ||||||||||| |||||||||  |||||| || |||||||||    
T  13704804 aattttctttttctctcttctttaaaactgttttctaaaacagatttata--aaacatattttaaaaactaaaaacaaaaactgatccaaacag 13704713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 33631751 - 33631696
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||  ||||||| |||||||||||| |||||| | |||||||||||||||||    
T  33631751 ctatcgggacacccaccatttatgtccactaaccaagctcaatagtgctggtcgtg 33631696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 31961050 - 31961136
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||  ||||||  || ||||| ||||||||||||| ||||| ||||||||| || ||||||    
T  31961050 atccattgggccacctgctatcaggtttctgctatcgtgccccccaccatttatgtccacggaccaagcccaatagtactagtcgtg 31961136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 2029876 - 2029962
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||  ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  2029876 atccattgggccacctgctattaggtttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 2029962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 5711651 - 5711565
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||| |||||| | ||| |||||||  |||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  5711651 atccgttggaccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 5711565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 14466364 - 14466301
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  14466364 ggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 14466301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 16419374 - 16419460
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| ||||||  |||||||| ||||||||||||||||||| | |||||||||||||||||    
T  16419374 atccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtg 16419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 16533411 - 16533505
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| |||||| |||| | ||| ||||| | ||||||| |||||||| |||||||||||||||||||  ||||||||||||||||||    
T  16533411 tcttcaagatccattgggctacctgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaaggccaatagtgctggtcgtg 16533505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 17525311 - 17525225
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||| ||| ||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  17525311 atccattgggccacctgctatcaggtatccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgatggtcgtg 17525225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 40149221 - 40149127
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| ||||| ||||| | ||| | ||||  ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  40149221 tcttcaagatccattgggtcacctgctatcagatttcagctatcggaccacccactatttatgtccacgaaccaagcccaatagtgctggtcgtg 40149127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 40379413 - 40379335
Alignment:
Q  31 ggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||| | ||| ||||||||||||||| |||||||| |||||| |||||||||||| ||||| |||||||||||||    
T  40379413 ggccacctgctatcaggtttcctctatcgggccacccaccatttatatccacgaaccaagcccaaaagtgctggtcgtg 40379335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 37812480 - 37812394
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||  ||||||| ||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  37812480 atccattgggccacctgctatcaggtttctgctatcgggccacccactgtttatgtccacgaaccaagcccaataatgctggtcgtg 37812394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 93331 - 93245
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| | |||||  |||||| |||||||| | ||||||||||||| ||| |||||||||||||||||||    
T  93331 atccattgggccacctgctatcagctttccgttatcgggccacccaccaattatgtccacgaatcaagcccaatagtgctggtcgtg 93245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 33606243 - 33606180
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||| | |||||||| ||||||||||||||||||| || ||||||| ||||||||    
T  33606243 ggtttccgctatcaggccacccaccatttatgtccacgaaccaagcctaatagtgatggtcgtg 33606180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 5596599 - 5596512
Alignment:
Q  195 ttttctttttctcttcttaaaaacg-ttttctaaaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaacag 283  Q
    |||||||||||||||||| ||| |  ||||||||||||||||| ||  ||||||||||| ||||||| |  |||||| ||||||||||||    
T  5596599 ttttctttttctcttcttgaaatcacttttctaaaattgattttta--aaacatattttgaaaactagaaacaaaaagtgttccaaacag 5596512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 18607221 - 18607135
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||| | | ||| |||||||  |||||| | |||||| ||||||||| ||||||||| |||||||||||| ||||||    
T  18607221 atccattgggccacatgctatcaggtttccgttatcgggcaacccaccatttatgtctacgaaccaagcccaatagtgctagtcgtg 18607135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 33381117 - 33381079
Alignment:
Q  71 atttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  33381117 atttatgtccacgaaccaaacccagtagtgctggtcgtg 33381079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 34893532 - 34893598
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaa 89  Q
    |||| ||||||||||| | ||| ||||| | ||||||| |||||||| |||||||||||||||||||    
T  34893532 atccattgggccacctactatcaggttttcgctatcggaccacccaccatttatgtccacgaaccaa 34893598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 44404107 - 44404052
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||  ||||||| ||||||||||| ||||||| |||||||||| ||||||||    
T  44404107 ctatcgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtg 44404052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 30701243 - 30701169
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaa 89  Q
    ||||||| |||| ||||||||||| | ||| |||||  |||||||| ||| |||| |||||||||||| ||||||    
T  30701243 tcttcaagatccattgggccacctactatcaggttttttctatcgggccatccaccatttatgtccacaaaccaa 30701169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 19981908 - 19981956
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgct 102  Q
    ||||||| |||||||| |||| |||| ||||||||||| ||||||||||    
T  19981908 ctatcggaccacccaccatttgtgtctacgaaccaaactcaatagtgct 19981956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 20327826 - 20327740
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| ||||||| |||||||| ||||||||||| ||||||| |||||||||| ||||||||    
T  20327826 atccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccaggaaccaagcccaatagtgttggtcgtg 20327740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 35038405 - 35038320
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||    
T  35038405 atccattgggccacctgcaatcaggtttccgctatcggcc-acccaccatttatgtccacgaaccaagcccaatagtactggtcgtg 35038320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 4155436 - 4155517
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | ||| ||||||| ||||||| ||||||||  |||||||| ||||||||| |||||||||||||||||||    
T  4155436 ttgggccacctgctatcaggtttccgctatcgggccacccaccgtttatgtcgacgaaccaagcccaatagtgctggtcgtg 4155517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 20303362 - 20303277
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgt 108  Q
    |||| ||||||||||| | ||| ||||||| ||||||| |||||||| |||||||||||||||||||  ||||||||| |||||||    
T  20303362 atccattgggccacctgctatcaggtttccactatcggtccacccaccatttatgtccacgaaccaagtccaatagtgttggtcgt 20303277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 34992718 - 34992799
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||||||| | ||| ||||||| || ||||  ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  34992718 ttgggccacctgctatcaggtttccgctgtcgggtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 34992799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 13574897 - 13574811
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||||||| | ||| ||||||| ||||||   ||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  13574897 atccattgggccacctgctatcaggtttccgctatcgtgtcacccaccatttatgtccacgaaccaagcccaatagtgctagtcgtg 13574811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 19954437 - 19954343
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||| |||||||| || | ||| ||||| | ||||| | |||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  19954437 tcttcaagatccattgggccatctgctatcaggttttcgctatctgaccacccaccatttatgtccacgaaccaagcccaatagtactggtcgtg 19954343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 20303276 - 20303190
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||| ||||| | ||| ||||||| ||||||| |||||||| |||||||||||||||||||  |||| |||||||||||||    
T  20303276 atccattgggtcacctgctatcaggtttccgctatcggtccacccaccatttatgtccacgaaccaagtccaacagtgctggtcgtg 20303190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 31317370 - 31317424
Alignment:
Q  55 tatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| |||||||| ||||||||||||||||||||| |||||||||||||||||    
T  31317370 tatcgggccacccaccatttatgtccacgaaccaaactcaatagtgctggtcgtg 31317424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 39683462 - 39683394
Alignment:
Q  41 catcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||||||  ||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  39683462 catcaggtttctgctatcgggccacccaccatttatgtccacgaaccaagcccaataatgctggtcgtg 39683394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 16239699 - 16239785
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||||||| | ||| |||||||  |||||  |||||||| ||||||||||||||||||| | |||||||| ||||||||    
T  16239699 atccgtttggccacctgctatcaggtttccgttatcgagccacccaccatttatgtccacgaaccaagctcaatagtgatggtcgtg 16239785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 20175987 - 20175900
Alignment:
Q  195 ttttctttttctcttcttaaaaacg-ttttctaaaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaacag 283  Q
    |||||||||||||||||| ||| |  ||||||||||||||||| ||  ||||||||||| |||||||||  |||||| ||||||||||||    
T  20175987 ttttctttttctcttcttgaaatcacttttctaaaattgattttta--aaacatattttgaaaactaaaaacaaaaagtgttccaaacag 20175900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 22729623 - 22729686
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| |||||||  ||||||| ||||||||||||||||||| ||||||| |||| ||||||    
T  22729623 ggtttccgctatcggatcacccacaatttatgtccacgaaccaagcccaataatgctagtcgtg 22729686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 29215752 - 29215714
Alignment:
Q  71 atttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  29215752 atttatgtccacgaaccaaacccaatagtgttggtcgtg 29215714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 39269213 - 39269267
Alignment:
Q  55 tatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| |||||||| ||||||||||||||||||| || ||||||| ||||||||    
T  39269213 tatcggaccacccaccatttatgtccacgaaccaaccctaatagtgttggtcgtg 39269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 29517891 - 29517801
Alignment:
Q  195 ttttctttttctcttcttaaaaacg-ttttctaaaattgatttatataaaacatattttcaaaactaaagccaaaaattgttccaaacagacc 286  Q
    |||||||||||||||||| ||| |  ||||||||||||||||| ||  ||| ||||||| |||||||||  ||||||  ||||||||||||||    
T  29517891 ttttctttttctcttcttgaaatcacttttctaaaattgattttta--aaatatattttaaaaactaaaaacaaaaaccgttccaaacagacc 29517801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 52724206 - 52724112
Alignment:
Q  15 tcttcaacatccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||||| | ||||| ||| | | ||| ||||| | ||||||| |||||||| ||||||||||| ||||||||| | |||||| || |||||    
T  52724206 tcttcaacattcattgggtcacatgctatcaggttttcgctatcgggccacccaccatttatgtccatgaaccaaactcgatagtgttgatcgtg 52724112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 21808875 - 21808838
Alignment:
Q  72 tttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  21808875 tttatgcccacgaaccaagcccaatagtgctggtcgtg 21808838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 2023 - 2109
Alignment:
Q  23 atccgttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| |||||||||||   ||| ||||||| ||||||   ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  2023 atccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtg 2109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 2624 - 2687
Alignment:
Q  46 ggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||| |||||| | ||||||||| |||||||||||| |||||||||| |||||    
T  2624 ggtttccgctatcgggccaccccccatttatgtctacgaaccaaacctaatagtgctgatcgtg 2687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 14543 - 14598
Alignment:
Q  54 ctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||||||  ||||||| ||||||||||| ||||||| |||||||||| ||||||||    
T  14543 ctatcgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcgtg 14598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 10886 - 10932
Alignment:
Q  63 cacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||||||| ||||||| |||||||||| ||||||||    
T  10886 cacccactatttatgtccatgaaccaagcccaatagtgttggtcgtg 10932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 81987 - 82034
Alignment:
Q  62 ccacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    |||| ||| ||||||||||| ||||||| |||||||||||||||||||    
T  81987 ccacgcaccatttatgtccatgaaccaagcccaatagtgctggtcgtg 82034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 13245 - 13291
Alignment:
Q  63 cacccacgatttatgtccacgaaccaaacccaatagtgctggtcgtg 109  Q
    ||||||| ||||||||||| ||||||| |||||||||| ||||||||    
T  13245 cacccactatttatgtccatgaaccaagcccaatagtgttggtcgtg 13291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 12759 - 12835
Alignment:
Q  28 ttgggccaccttccatcgggtttcctctatcggcccacccacgatttatgtccacgaaccaaacccaatagtgctgg 104  Q
    ||||||||||| | ||| || || | |||||||  ||||||| |||||||| |||||||||| | ||||||||||||    
T  12759 ttgggccacctactatcaggatttcgctatcggaacacccaccatttatgttcacgaaccaagctcaatagtgctgg 12835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University