View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_low_22 (Length: 210)
Name: NF15007_low_22
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 32615088 - 32615261
Alignment:
| Q |
17 |
agttacaagattaaactcttacgtgtgagctgacatctcatggagaaattgatcatattttatcttaagaaaggatgttttatgacaatagttatccctc |
116 |
Q |
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| T |
32615088 |
agttacaagattaaactcttacgcgtgagctgacacctcatggagaaattgatcttattttatcttaagaaat-atggtttatgacaatagttatccctc |
32615186 |
T |
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| Q |
117 |
tttaaagaggaatcattattaattaaatgacactaatggccattttcaactggatcaccgagagaaattgaactt |
191 |
Q |
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| T |
32615187 |
tttaaggaggaattattattaattaaatgacactaatggccattttcaactggctcactgagagaaattgaactt |
32615261 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 32615001 - 32615083
Alignment:
| Q |
115 |
tctttaaagaggaatcattattaattaaatgacactaatggccattttcaactggatcaccgagagaaattgaacttcttctc |
197 |
Q |
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| T |
32615001 |
tctttaaggagaaattgttattaatcaaatgacactaatggccgttttcaactggctcactgacagaaattgaacttcttctc |
32615083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 32615302 - 32615368
Alignment:
| Q |
18 |
gttacaagattaaactcttacgtgtgagctgacatctcatggagaaattgatcatattttatcttaa |
84 |
Q |
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| T |
32615302 |
gttacaagatcaaactcttacgtttaagctgtcaccttatggagaaattgattttattttatcttaa |
32615368 |
T |
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