View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_low_3 (Length: 628)
Name: NF15007_low_3
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 29091231 - 29091842
Alignment:
| Q |
1 |
tcataattcatcaaaacacaaaactactctatattacaaatatgagatacattatatatgcattatttctacatcacatattatcaattctttctatttc |
100 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29091231 |
tcataattcatcataagacaaaactactctatattacaaatatgagaaacattatatatgcattatttctacatcacatattatcaattctttctatttc |
29091330 |
T |
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| Q |
101 |
tttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttcannnnnnnnnnnnn |
200 |
Q |
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| T |
29091331 |
tttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttcattttttttgtttt |
29091430 |
T |
|
| Q |
201 |
nactttgtgatccttttctttctctaccatattcaccataacaaacaattgcccttatactatatggcccggcacactcgccggtgcaggcgcgccagcg |
300 |
Q |
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| T |
29091431 |
tactttgttatctttttctttctctaccatattcaccataacaaacaattgcccttatactatatggccaggcacactcgccggtgcaggcacgtcagcg |
29091530 |
T |
|
| Q |
301 |
cttccatcaactggatttcagcttgacccaagtcaagctgcaaaactaacaagtgttccagggtggtcgggtcggatatgggcgaggactggttgcacat |
400 |
Q |
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| T |
29091531 |
cttccatcaactggatttcagcttgactcaggtcaagctgcgaaactaacaagtgttccagggtggtcgggtcggatatgggcgaggactggttgcacat |
29091630 |
T |
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| Q |
401 |
ttgatgcatccggaattggcaaatgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacctacttcacttttcgagat |
500 |
Q |
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| T |
29091631 |
ttgatgcatccggaattggcaaatgccaaacgggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacctacttcacttttcgagat |
29091730 |
T |
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| Q |
501 |
tacaattggacaaggcgatcaacaagattactatgatgttagtatggttgatggatacaatctcccaatgcttgttctaccaagaggtgtatatggtaaa |
600 |
Q |
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| T |
29091731 |
tacaattggacaaggtgatcaacaagattactatgatgttagtatggttgatggatacaatctcccaatgcttgttctaccaagaggtgtatatggtaaa |
29091830 |
T |
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| Q |
601 |
agtgcatgtaat |
612 |
Q |
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| T |
29091831 |
agtgcatgtaat |
29091842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 29083938 - 29084200
Alignment:
| Q |
30 |
tatattacaaatatgagatacattatatatgcattatttctacatcacatattatcaattctttctatttctttcccaaaggacacaaccataaaataac |
129 |
Q |
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| T |
29083938 |
tatattacaaatatgagaagcattatatatccattatttctacatcaccatttatcaatattttctatttcttccccaaaggacacaaccataaaataac |
29084037 |
T |
|
| Q |
130 |
aaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttcannnnnnnnnnnnnnactttgtgatc-cttttctttctctacc |
228 |
Q |
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| T |
29084038 |
aaacaactataatcattcataatgccaagagttgtaccttggaaactcctaagtttcatttattttgtttttactttattatcttttttctatctctagc |
29084137 |
T |
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| Q |
229 |
atattcaccataacaaacaattgcccttatactatatggcccggcacactcgccggtgcaggc |
291 |
Q |
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| T |
29084138 |
atattcaccgtaacaaacaatttcccttatactatattgaccggcacactcgccggtgcaggc |
29084200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 394 - 576
Target Start/End: Original strand, 29084285 - 29084467
Alignment:
| Q |
394 |
tgcacatttgatgcatccggaattggcaaatgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacctacttcacttt |
493 |
Q |
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| T |
29084285 |
tgcacatttgatgcattaggaattgacaagtgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacgtgatggacttt |
29084384 |
T |
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| Q |
494 |
tcgagattacaattggacaaggcgatcaacaagattactatgatgttagtatggttgatggatacaatctcccaatgcttgtt |
576 |
Q |
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| T |
29084385 |
tcgagattacaattggtcaaggtgatcaacaagattgctatgatgttagcatggttgatggatgcaatcttccaatgcttgtt |
29084467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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