View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_low_4 (Length: 440)
Name: NF15007_low_4
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 25 - 422
Target Start/End: Complemental strand, 18253467 - 18253074
Alignment:
| Q |
25 |
caaaccaaatattaggaaaatacagcacgtacgtttattcatctcatgtcacaaatttcttaacacactccttcaaaacacttgacacaatcagaaacag |
124 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18253467 |
caaaccaaatattaggaaaatacaacatgtacgtttattcatctcatgtcacaaatttcttaacacactccttcaaaacacttgacacaaccagaaacag |
18253368 |
T |
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| Q |
125 |
acacaacgaaatgaaatataaataattgaaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcatatatagtttaaccacta |
224 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
18253367 |
acacaacgaaatgaaagataaataattaaaagaaaacccagtaatcctgaagattcctcattctttcatatgaataacatcata----gtttaaccacta |
18253272 |
T |
|
| Q |
225 |
cctccaagaacactcttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaat |
324 |
Q |
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| T |
18253271 |
cctccaagaacactcttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaat |
18253172 |
T |
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| Q |
325 |
ccaatatctgtaaacgaggattagcactactaaagctattaaaagtaagtgcattagaaccaccaacattaatttggaaatgcaacaatccttgtgga |
422 |
Q |
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| T |
18253171 |
ccaatatctgtaaacgaggattagcactactaaagctattaaaagtaagtgcattagaaccaccaacattaatttggaaatgcaacaatccttgtgga |
18253074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 153 - 422
Target Start/End: Original strand, 18256230 - 18256494
Alignment:
| Q |
153 |
aaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcatatatagtttaaccactacctccaagaacactcttaagcttcttca |
252 |
Q |
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| T |
18256230 |
aaagaaaagccagtaa-catgaagattcctcactctttcatatgaataacatcataa----tttaaccacgacctccaagaatacccttaagcttcttca |
18256324 |
T |
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| Q |
253 |
ctacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatctgtaaacgaggattagcact |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18256325 |
ctacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatctgtaaacgaggattagcact |
18256424 |
T |
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| Q |
353 |
actaaagctattaaaagtaagtgcattagaaccaccaacattaatttggaaatgcaacaatccttgtgga |
422 |
Q |
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| T |
18256425 |
actaaagctattaaaagtaagtgcattagaaccaccaacattaatttggaaatgcaacaatccttgtgga |
18256494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 214 - 422
Target Start/End: Complemental strand, 18246178 - 18245970
Alignment:
| Q |
214 |
tttaaccactacctccaagaacactcttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaa |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||| |
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| T |
18246178 |
tttaaccactacctccaagaacacccttaagcttcttcactacagcagcatcaataaaagtagttgcagtaatcaactccgttggaaaatcacttttaaa |
18246079 |
T |
|
| Q |
314 |
caaagcgtaatccaatatctgtaaacgaggattagcactactaaagctattaaaagtaagtgcattagaaccaccaacattaatttggaaatgcaacaat |
413 |
Q |
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| T |
18246078 |
caaagcaaaatccaatatctgtaaaccagggttagcactactaaagctaacaaaagcaagtgcattagaaccaccactgttaatttggaaatgcaacaat |
18245979 |
T |
|
| Q |
414 |
ccttgtgga |
422 |
Q |
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||||||||| |
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| T |
18245978 |
ccttgtgga |
18245970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 18246347 - 18246303
Alignment:
| Q |
40 |
gaaaatacagcacgtacgtttattcatctcatgtcacaaatttct |
84 |
Q |
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||||||||| ||| ||| ||||||||||||||||||||||||||| |
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| T |
18246347 |
gaaaatacaacacatacatttattcatctcatgtcacaaatttct |
18246303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 18256132 - 18256191
Alignment:
| Q |
26 |
aaaccaaatatt-aggaaaatacagcacgtacgtttattcatctcatgtcacaaatttct |
84 |
Q |
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|||||||||||| | ||||||| | ||| ||| ||||||||||||||||||||||||||| |
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| T |
18256132 |
aaaccaaatattcaagaaaataaaacacatacatttattcatctcatgtcacaaatttct |
18256191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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