View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15007_low_5 (Length: 436)
Name: NF15007_low_5
Description: NF15007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15007_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 32896159 - 32896543
Alignment:
| Q |
18 |
gatatcaagaccaaagttaaaaggcagtacaatagcggagacggagacgtagaagaatgcagaatatagcaagtatctttagctggtaaggtagcagaga |
117 |
Q |
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| T |
32896159 |
gatatcaagaccaaagttaaaaggcagtacaatagtggagacggagacgtagaagaatgcagaatatagcaagcatccttagctggtaaggtagcagaga |
32896258 |
T |
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| Q |
118 |
tgtacaatgtacatccaattgtgcatatgataaaatttgcacaacttgaggatatgaggtttattctggctataatgtaaacgctttgtgtaaaacaagg |
217 |
Q |
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| T |
32896259 |
tgtacaatgtacatccaagtgtgcatatgataaaatttgcacaacttgaggatttgaggtttattctggctataatgtaaacgctttgtgtaaaacaagg |
32896358 |
T |
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| Q |
218 |
cttcataaagtttgttttaagctacctgttttacaagacaaaagtttagtctagaccagaattatacaacctaggtggccatttagacaaatccattaaa |
317 |
Q |
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| T |
32896359 |
cttcataaagtttgttttaagctacctgttttacaagacaaaagtttagtctagaccagaattatacaacctaggtggccatttagacaaatccattaaa |
32896458 |
T |
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| Q |
318 |
ttacatggttatcagtatcgtatgagacatattagtcgtatctcgattagttattaaactaaactcaatcgatacgaatttcttg |
402 |
Q |
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| T |
32896459 |
ttacatggttatcagtatcgtatgagacatattagtcgtatctcgattagttattaaactaaactcaatcgatacgaatttcttg |
32896543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 374
Target Start/End: Original strand, 32885583 - 32885751
Alignment:
| Q |
202 |
tttgtgtaaaacaaggcttcataaagtttgttttaagctacctgttttacaagacaaaagtttagtctagaccagaattatacaacct-aggtggccatt |
300 |
Q |
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| T |
32885583 |
tttgtgtaaaacaaggcttcacaaagtttgttttcagctactagttttacaagacaaaaatttagtctataccagaattttataacctaatgtggccatt |
32885682 |
T |
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| Q |
301 |
tagacaaatccattaaattacatggttatcagtatcgtatgagacatattagtcgtatctcgattagttattaa |
374 |
Q |
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| T |
32885683 |
tagacaaatc-----acttacatggttattagtatcttacgatgcatagtagtcgaatctcgatttgatattaa |
32885751 |
T |
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