View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15008_high_1 (Length: 318)
Name: NF15008_high_1
Description: NF15008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15008_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 11213547 - 11213852
Alignment:
| Q |
1 |
caccattgctaaaagattaacaggaactgttgctctagagaatgcaccaggatttgtatgcaa----atgcagccaatatgtgtgtgaagtgtttgcgct |
96 |
Q |
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| T |
11213547 |
caccatcgctaaaagattaacaggaactgttgctctagagaatgcaccaggatttgtatgcaaccaaatgcagccaatatgtgtgtgaagtgtttgcgct |
11213646 |
T |
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| Q |
97 |
cagaagtttatatcacggaagg-ttactgaagcttttggtgctttttcattccccagagtgtgaaagttacttgcagccaccgagaacttgggtcaaact |
195 |
Q |
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| T |
11213647 |
cagaagtttatatcacggaagggttactgatgcttttggtgcttgttcattcccctgagtgtgaaagttacttgcagccaccgagaacttaggtcaaact |
11213746 |
T |
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| Q |
196 |
gcagttaaaatcaaaggagttgttggcattttgcttgaaaaaatggtagaagaatatgaatatcaataaggcaaagttagtgcatgctgagtttatctgg |
295 |
Q |
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| T |
11213747 |
gcagttagaatcaaaggagttgttggcattttgcttgaaaaaatggtagaagaatatgaatatcaataaggcaaagttagtgcatgctgagtttatctgg |
11213846 |
T |
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| Q |
296 |
acaggt |
301 |
Q |
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|||||| |
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| T |
11213847 |
acaggt |
11213852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 264
Target Start/End: Original strand, 43995471 - 43995664
Alignment:
| Q |
72 |
aatatgtgtgtgaagtgtttgcgctcagaagtttatatcacggaagg-ttactgaagcttttggtgctttttcattccccagagtgtgaaagttacttgc |
170 |
Q |
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| T |
43995471 |
aatatgtgtttgaagtgtttgtgctcagaagttgatattacagaaggcttactgaagctccatgtgattgtgcattgccccgagtgccaaagctacttgc |
43995570 |
T |
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| Q |
171 |
agccaccgagaacttgggtcaaactgcagttaaaatcaaaggagttgttggcattttgcttgaaaaaatggtagaagaatatgaatatcaataa |
264 |
Q |
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| T |
43995571 |
agccaccgagaacttgggtcaaactacaattagaaacaaaggagctgttggcattttgcttgaaaagattgcaaaagaatatgaatgtcaataa |
43995664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 61 - 299
Target Start/End: Original strand, 29270859 - 29271098
Alignment:
| Q |
61 |
caaatgcagccaatatgtgtgtgaagtgtttgcgctcagaagtttatatcacggaagg-ttactgaagcttttggtgctttttcattccccagagtgtga |
159 |
Q |
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| T |
29270859 |
caaatgcagccaatatgtgtgtgaagtgtttgcgctcagaagttgatatcacggaagggttactgaagcgtctggtgcttgttcattgccctgagtgtga |
29270958 |
T |
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| Q |
160 |
aagttacttgcagccaccgagaacttgggtcaaactgcagttaaaatcaaaggagttgttggcattttgcttgaaaaaatggtagaagaatatgaatatc |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||| |
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| T |
29270959 |
aagttacttgcagccaccgagaacttgggtcaaactgcagttagaatcaaaggagctgttgacattttgcttgaaaaaattgcagaagaatatgaatatc |
29271058 |
T |
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| Q |
260 |
aataaggcaaagttagtgcatgctgagtttatctggacag |
299 |
Q |
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| T |
29271059 |
aataaggcaaagttagtaaatgctgagtttatttggacag |
29271098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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