View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15008_low_2 (Length: 274)
Name: NF15008_low_2
Description: NF15008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15008_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 36303544 - 36303670
Alignment:
| Q |
138 |
tttcaaatggtaatgtttagggatacggtaatgcttagtacagctatatccaaaaccacgacactatatggaagtgtacataagtgctgttgaattgaaa |
237 |
Q |
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| T |
36303544 |
tttcaaatggtaatgtttagggatacggtaatgcttagtacagcgatatccaaaaccacgacactatatgaaagtgtacataagtgctattgaattgaaa |
36303643 |
T |
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| Q |
238 |
ttttgacttcaatacacctatgcttct |
264 |
Q |
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| T |
36303644 |
gtttgacttcaaaacacccatgattct |
36303670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36303407 - 36303472
Alignment:
| Q |
1 |
tcttgtctataactattattaaattattctttgtgtataaatacatttgatatcactgttcatatt |
66 |
Q |
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| T |
36303407 |
tcttgtctataactattattaaattattctttgtgtataaatacatttgatatcactgttcatatt |
36303472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 27513181 - 27513273
Alignment:
| Q |
163 |
cggtaatgcttagtacagctatatccaaaaccacgacactatatggaagtgtacataagtgctgttgaattgaaattttgacttcaatacacc |
255 |
Q |
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| T |
27513181 |
cggtaatgcttagtatagtgaaatccaaaatcacgacaatattcccaagtgtacataagtgctactgaattgaaagtttgacttcaatacacc |
27513273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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