View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15009_high_3 (Length: 440)
Name: NF15009_high_3
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15009_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 28536207 - 28536526
Alignment:
| Q |
1 |
ttctctcttcgttgtagttcacgaaaatcatctttaattactatcaaccctcaacttataggttgtgttgtcttttcgttacatcgagcaacttacattc |
100 |
Q |
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| T |
28536207 |
ttctctcttcgttgtagttcacgaaaatcgtctttaattactatcaaccctcaacttataggttgcgttgtcttttcgttacatcgagcaacttacattc |
28536306 |
T |
|
| Q |
101 |
aatctcttacatcaataaaaatttcattttaagtattcgaaatcaagtattttacatcaataaaaatttcgacaacaatcacaactgtatttcatctcaa |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28536307 |
aatctcttacatcaataaaaatttcactttaagtattcgaaatcaagtattttacatcaataaaaatttcaacaacaatcacaactgtatttcatctcaa |
28536406 |
T |
|
| Q |
201 |
atgtttcataatttcaaacaaactatcagctcacagaaattataattatagcttgagatagacaactaacaacataagtgctaaggtataaaaacaaact |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536407 |
atgtttcataatttcaaacaaactatcagctcaaagaaattataattatagcttgagatagacaactaacaacataagtgctaaggtataaaaacaaact |
28536506 |
T |
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| Q |
301 |
gaataatcaacaatagtctgca |
322 |
Q |
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|| |||||||||||||||||| |
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| T |
28536507 |
ga--aatcaacaatagtctgca |
28536526 |
T |
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