View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15009_high_4 (Length: 363)
Name: NF15009_high_4
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15009_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 36522342 - 36522119
Alignment:
| Q |
15 |
catcatcatgggctttttccaatgctttggtaagaaggaactattaacattgaagttagtgtaaagtgggctgtgaaagatcatgtatacttgtactttt |
114 |
Q |
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| T |
36522342 |
catcatcatgggctttttccaatgttttggtaagaaggaactattagcattgaagttagtgtaaagtgggttgtgaaagatcatgtatacttgttctttt |
36522243 |
T |
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| Q |
115 |
tggtcctagaatagcgttatttgaatgtgtaaagggatttgaggaccaaaaaagtgggaatctgtcaacatatattggaagatacgttaagggttagcaa |
214 |
Q |
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| T |
36522242 |
tggtcctagaatagcgttatttgaatgtgtaaagggatttgaggaccaaaaaagtgggaatatgtcaacatatattggaagatacgttaagggttagcaa |
36522143 |
T |
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| Q |
215 |
taaatggaagctttaagttgattg |
238 |
Q |
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| T |
36522142 |
taaattgaagctttaagttgattg |
36522119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 36522048 - 36522017
Alignment:
| Q |
309 |
tggtcactattcaatggccatttggttagtta |
340 |
Q |
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| T |
36522048 |
tggtcactattcaatggccatttggttagtta |
36522017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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