View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15009_high_6 (Length: 317)
Name: NF15009_high_6
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15009_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 161 - 300
Target Start/End: Complemental strand, 23827294 - 23827155
Alignment:
| Q |
161 |
ttagtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggttgtttatatgtagggaactaatatgggtgaatata |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23827294 |
ttagtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggtggtttatatgtagggaactaatatgggtgaatata |
23827195 |
T |
|
| Q |
261 |
ctgtggtggcccacaaaagcaagatcgatgaagcactaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23827194 |
ctgtggtggcccacaaaagcaagatcgatgaagcactaac |
23827155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23827455 - 23827370
Alignment:
| Q |
1 |
cataactttgttgcctgtagatcacaacaacaaagcagagaaggtcaactccaaaagaaatgactcatgattgtgaattgaaactc |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23827455 |
cataactttgttgcctgtagatcacaacaacaaagcagagaaggtcaactccaaaagaaatgactcatgattgtgaattgaaactc |
23827370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 23831338 - 23831229
Alignment:
| Q |
164 |
gtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggttgtttatatgtagggaactaatatgggtgaatatactg |
263 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| ||| || ||||||||||| |||| ||| |||| |||||||| |||||||||||| ||| | | ||| |
|
|
| T |
23831338 |
gtaatgaagttcaaggaagaatataaagaagaaaaacaggaaggaggagaggtgaagaagagtgttgatatgtagagaactaatatggatgagtcttctg |
23831239 |
T |
|
| Q |
264 |
tggtggccca |
273 |
Q |
| |
|
|||||||||| |
|
|
| T |
23831238 |
tggtggccca |
23831229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23823593 - 23823522
Alignment:
| Q |
1 |
cataactttgttgcctgtagatcacaacaacaaagcagagaaggtcaactccaaaagaaatgactcatgatt |
72 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
23823593 |
catagctttgttgcctatagatcacaacaacaaagtagagaaggtcatatccaacagaaatgaaccatgatt |
23823522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University