View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15009_low_1 (Length: 513)
Name: NF15009_low_1
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15009_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 16 - 495
Target Start/End: Original strand, 43061711 - 43062190
Alignment:
| Q |
16 |
tcaaatccggcctcggaactcgccgtccatggaaactcctcgtcaacctccgttccttcaacctcccatccaacttccacgacgctatctcccgtatcaa |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061711 |
tcaaatccggcctcggtactcgccgtccatggaaactcctcgtcaacctccgttccttcaacctcccatccaacttccacgacgctatctcccgtatcaa |
43061810 |
T |
|
| Q |
116 |
aaccaacatctctttcttccagatgaactacgccatcatccttctcatcatcctcttcctcagtcttctctggcatccaatctcactcatcgtcttcgtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061811 |
aaccaacatctctttcttccagatgaactacgccatcatccttctcatcatcctcttcctcagtcttctctggcatccaatctcactcatcgtcttcgtc |
43061910 |
T |
|
| Q |
216 |
gttctcatagctgcgtggttgtttctctactttcttcgcgatgaacctattgttatctttggacgactcatcagtgatcgtgttattcttgtgcttatgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061911 |
gttctcatagctgcgtggttgtttctctactttcttcgcgatgaacctattgttatctttggacgactcatcagtgatcgtgttattcttgtgcttatgt |
43062010 |
T |
|
| Q |
316 |
tgattctcaccgttggattgcttttgcttactggtgcgattctcaatattcttatcgccgttgcagttggtgttgttgttattcttcttcatgctgcttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43062011 |
tgattctcaccgttggattgcttttgcttactggtgcgattctcaatattcttatcgccgttgcagttggtgttgtagttattcttcttcatgctgcttt |
43062110 |
T |
|
| Q |
416 |
tagaaacaccagtgatctgtttcttgatgaagaagaaggactttcgttttctccacctggtgctcctgtttcttgatcct |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43062111 |
tagaaacaccagtgatctgtttcttgatgaagaagaaggacattcgttttctccacctggtgctcctgtttcttgatcct |
43062190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 43059393 - 43059709
Alignment:
| Q |
14 |
catcaaatccggcctcggaactcgccgtccatggaaactcctcgtcaacctccgttccttcaacctcccatccaacttccacgacgctatctcccg-tat |
112 |
Q |
| |
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|||||||| || | ||||||||||||||||||||||||| || ||||| | | || |||||||||||| ||| ||| |||| || ||||| || ||| |
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| T |
43059393 |
catcaaattcgtcatcggaactcgccgtccatggaaacttttcttcaacgttcaatcattcaacctcccacgcaatttcaacgatgcaatctctcggtat |
43059492 |
T |
|
| Q |
113 |
caaaaccaacatctctttcttccagatgaactacgccatcatccttctcatcatcctcttcctcagtcttctctggcatccaatctcactcatcgtcttc |
212 |
Q |
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|||| |||||||| |||||| ||||||||||| | |||||||| ||||||||||||||||||||||||| | ||||||| || |||||||||||| |
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| T |
43059493 |
-aaaatcaacatctgcttcttcgagatgaactacactatcatcctcgtcatcatcctcttcctcagtcttctatttcatccaacttcgctcatcgtcttc |
43059591 |
T |
|
| Q |
213 |
gtcgttctcatagctgcgtggttgtttctctactttcttcgcgatgaacctattgttatctttggacgactcatcagtgatcgtgttattcttgtgctta |
312 |
Q |
| |
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||| ||||| ||| | ||| | || ||||| || ||||| |||||||| || | | |||||| |||||||||||||||||||| || || | | | |
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| T |
43059592 |
ctcgaactcatggcttcctggctcttcctctatttccttcgtgatgaaccgtttactgtgtttggaagactcatcagtgatcgtgttgttgtttttccga |
43059691 |
T |
|
| Q |
313 |
tgttgattctcaccgttg |
330 |
Q |
| |
|
|||||||||||||||||| |
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| T |
43059692 |
tgttgattctcaccgttg |
43059709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 31283022 - 31283098
Alignment:
| Q |
141 |
aactacgccatcatccttctcatcatcctcttcctcagtcttctctggcatccaatctcactcatcgtcttcgtcgt |
217 |
Q |
| |
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||||||||||||||| | ||| |||||||||||||||| || |||| || || |||| |||||||||||| |||| |
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| T |
31283022 |
aactacgccatcatcatcctcttcatcctcttcctcagcctcctctaccaccctctctccctcatcgtcttcctcgt |
31283098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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