View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15009_low_12 (Length: 253)

Name: NF15009_low_12

Description: NF15009

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15009_low_12

[»] chr4 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 202; E-Value: 1e-110

Query Start/End: Original strand, 1 - 242

Target Start/End: Original strand, 53956615 - 53956855

Alignment:

Q	1	ttaattcatatgcatgaaccgtgtaaaaatattttacattgtcattcaatcgtttcgaagtgttagatcatatataacaaaagtttgactttcaacatat	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\|\|\|
T	53956615	ttaattcatatgcatgaaccgtgtaaaaatattttacattgtcattcaatcgttcctaagtgttcgatcatatataacaaaagtttgatttttaatatat	53956714	T

Q	101	ctgacttaaaagtcatatagatggttgtttgtgattgatttcttttgtaaaaagttttactatgatagggcataaaatatttctttatttaatactactt	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53956715	ctgacttaaaagtcatacagatggttgtttgtgattgatttcttttgt-aaaagttttactatgatagggcataaaatatttctctatttaatactactt	53956813	T

Q	201	aatacttctcctttttaggctatatatggttatactaattga	242	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53956814	aatacttctcctttttaggctatatatggttatactaattga	53956855	T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 79 - 117

Target Start/End: Complemental strand, 10513208 - 10513170

Alignment:

Q	79	aaaagtttgactttcaacatatctgacttaaaagtcata	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10513208	aaaagtttgactttcatcatatctaacttaaaagtcata	10513170	T

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