View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15009_low_15 (Length: 236)
Name: NF15009_low_15
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15009_low_15 |
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| [»] scaffold1870 (1 HSPs) |
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| [»] scaffold0419 (1 HSPs) |
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| [»] scaffold0277 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 35985681 - 35985456
Alignment:
| Q |
1 |
attgtaattaatttctcacaatattcaaatgagaatgtttctaaatttaagagagaagacacgtcaggtatttctgtcaaacaatctgcatcatcaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35985681 |
attgtaattaatttctcacaatattcaaatgagaatgtttctaaatttaagagagaagacacgtcaggtatttctgtcaaacaatctgcatcatcaaaat |
35985582 |
T |
|
| Q |
101 |
tcaatatcttcatatttatgaacttttgcaaaataaataaagaaatgagaaccaaatggataatgttaaaaatgaagttatggttaacttgcattgcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35985581 |
tcaatatcttcatatttatgaacttttgcaaaataaataaagaaatgagaaccaaatggataatgtgaaaaatgaagttatggttaacttgcattgcata |
35985482 |
T |
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| Q |
201 |
ccaaggcaacgaagattatactaatt |
226 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
35985481 |
ccaaggcaacgaagattagactaatt |
35985456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 31907371 - 31907240
Alignment:
| Q |
1 |
attgtaattaatttctcacaatattcaaatgagaatgtttctaaatttaagagagaagacacgtcaggtatttctgtcaaacaatctgcatcatcaaaat |
100 |
Q |
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|||||| |||| |||| |||| || |||||| ||| |||||||||||| |||||||| |||||||||||||| ||| | || || |||||||||| |
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| T |
31907371 |
attgtagttaaattcttacaacgtttaaatgaaaataattctaaatttaaaagagaagatgtatcaggtatttctgttaaaaattccgcgtcatcaaaat |
31907272 |
T |
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| Q |
101 |
tcaatatcttcatatttatgaacttttgcaaa |
132 |
Q |
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|||| ||||||||||| | |||||| |||||| |
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| T |
31907271 |
tcaaaatcttcatattcaagaacttctgcaaa |
31907240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1870 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1870
Description:
Target: scaffold1870; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1109 - 1062
Alignment:
| Q |
1 |
attgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
48 |
Q |
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||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
1109 |
attgtaattaaattctcacaatattcaaaggagaacttttctaaattt |
1062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9828 - 9781
Alignment:
| Q |
1 |
attgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
48 |
Q |
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||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
9828 |
attgtaattaaattctcacaatattcaaaggagaacttttctaaattt |
9781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2558 - 2605
Alignment:
| Q |
1 |
attgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
48 |
Q |
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||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
2558 |
attgtaattaaattctcacaatattcaaaggagaacttttctaaattt |
2605 |
T |
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