View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15009_low_17 (Length: 225)

Name: NF15009_low_17
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15009_low_17
NF15009_low_17
[»] chr2 (8 HSPs)
chr2 (111-207)||(25050109-25050205)
chr2 (31-91)||(36072549-36072609)
chr2 (23-58)||(25050252-25050287)
chr2 (16-78)||(8234784-8234846)
chr2 (23-93)||(11133124-11133194)
chr2 (23-81)||(19905644-19905702)
chr2 (28-78)||(30474187-30474237)
chr2 (47-91)||(20533829-20533873)
[»] chr4 (9 HSPs)
chr4 (111-207)||(54267371-54267467)
chr4 (22-93)||(37274627-37274698)
chr4 (28-81)||(10757764-10757817)
chr4 (28-81)||(10970935-10970988)
chr4 (23-77)||(37032172-37032226)
chr4 (47-92)||(1297925-1297970)
chr4 (17-78)||(47017938-47017999)
chr4 (22-74)||(3442890-3442942)
chr4 (49-81)||(6365398-6365430)
[»] chr8 (6 HSPs)
chr8 (23-93)||(14010749-14010819)
chr8 (17-77)||(9524999-9525059)
chr8 (17-77)||(24608476-24608536)
chr8 (23-78)||(43468697-43468752)
chr8 (47-93)||(3379625-3379671)
chr8 (28-81)||(10184790-10184843)
[»] chr7 (6 HSPs)
chr7 (23-81)||(2366405-2366463)
chr7 (28-78)||(30644222-30644272)
chr7 (28-81)||(21086157-21086210)
chr7 (17-78)||(21285345-21285406)
chr7 (17-78)||(29658264-29658325)
chr7 (22-78)||(47552260-47552316)
[»] chr3 (8 HSPs)
chr3 (23-93)||(43774233-43774303)
chr3 (17-76)||(42271007-42271066)
chr3 (47-93)||(32508771-32508817)
chr3 (16-74)||(50144602-50144660)
chr3 (28-81)||(35477784-35477837)
chr3 (17-78)||(46328916-46328977)
chr3 (28-92)||(14417921-14417985)
chr3 (17-77)||(24537869-24537929)
[»] chr5 (5 HSPs)
chr5 (28-92)||(1244705-1244769)
chr5 (26-81)||(29841399-29841454)
chr5 (23-81)||(6806629-6806687)
chr5 (17-78)||(20945883-20945944)
chr5 (42-78)||(26169006-26169042)
[»] chr1 (5 HSPs)
chr1 (22-78)||(32711136-32711192)
chr1 (23-93)||(11405504-11405574)
chr1 (23-92)||(15774290-15774359)
chr1 (16-86)||(24168559-24168633)
chr1 (28-81)||(24636777-24636830)
[»] chr6 (3 HSPs)
chr6 (28-78)||(15288947-15288997)
chr6 (22-78)||(18904675-18904731)
chr6 (25-93)||(26598571-26598639)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 25050205 - 25050109
Alignment:
Q  111 gtaccggaaagttaagaatggtatccggaccccaatatttcaatgctgctagatcatacgcatgtgcagctgcctcttcatcgtcataagctcctga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25050205 gtaccggaaagttaagaatggtatccggaccccaatatttcaatgctgctagatcatacgcatgtgcagctgcctcttcatcgtcataagctcctga 25050109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 36072609 - 36072549
Alignment:
Q  31 gaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactga 91  Q
    ||||| ||||||| | |||||| ||||||||||||||||||||||||| ||| ||| ||||    
T  36072609 gaacttcagacactccacttattcaccttataaggtaaattctagccactaaattacctga 36072549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 25050287 - 25050252
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccacct 58  Q
    |||||||||||| |||||||||||||||||||||||    
T  25050287 cgggattcgaaccccagacacacaacttatccacct 25050252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 8234846 - 8234784
Alignment:
Q  16 tagggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    ||||| ||||| ||||||| || ||||| | |||||| ||||||||||||| |||||||||||    
T  8234846 taggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 8234784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 11133124 - 11133194
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactgaca 93  Q
    |||| ||||||| || ||||| | |||||| ||||||||||||| ||||||||||| || |||| ||||||    
T  11133124 cggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagccactaggttacctgaca 11133194  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 19905702 - 19905644
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    |||| ||||||| || ||||| | |||||| ||||||||||||| ||||||||||||||    
T  19905702 cggggttcgaaccccggacacccgacttattcaccttataaggtgaattctagccatta 19905644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 30474237 - 30474187
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    ||||||| |||||||| | |||||| ||||||||||||| |||||||||||    
T  30474237 ttcgaaccccagacaccccacttattcaccttataaggtgaattctagcca 30474187  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 20533829 - 20533873
Alignment:
Q  47 acttatccaccttataaggtaaattctagccattaagttaactga 91  Q
    |||||| ||||||||||||||||||||| ||| ||||||| ||||    
T  20533829 acttattcaccttataaggtaaattctaaccactaagttatctga 20533873  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 54267467 - 54267371
Alignment:
Q  111 gtaccggaaagttaagaatggtatccggaccccaatatttcaatgctgctagatcatacgcatgtgcagctgcctcttcatcgtcataagctcctga 207  Q
    |||||||||| |||| |||||||||  ||||||||||||||||||||||||||||||| |||||||| || | ||| ||||  |||||||| |||||    
T  54267467 gtaccggaaaattaataatggtatcttgaccccaatatttcaatgctgctagatcataagcatgtgctgccgtctcctcattatcataagcacctga 54267371  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 37274627 - 37274698
Alignment:
Q  22 ccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactgaca 93  Q
    ||||| ||||||| || ||||| | |||||| || ||||||||||||||||||||||||| |||| ||||||    
T  37274627 ccggggttcgaaccccggacaccccacttattcatcttataaggtaaattctagccattaggttacctgaca 37274698  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 10757817 - 10757764
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    ||||||| || ||||| | |||||| ||||||||||||||||||||||||||||    
T  10757817 ttcgaaccccggacaccccacttattcaccttataaggtaaattctagccatta 10757764  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 10970988 - 10970935
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    ||||||| || ||||| | |||||| ||||||||||||||||||||||||||||    
T  10970988 ttcgaaccccggacaccccacttattcaccttataaggtaaattctagccatta 10970935  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 37032226 - 37032172
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcc 77  Q
    |||||||||||| || ||||| | |||||| ||||||||||||| ||||||||||    
T  37032226 cgggattcgaaccccggacaccccacttattcaccttataaggtgaattctagcc 37032172  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 1297925 - 1297970
Alignment:
Q  47 acttatccaccttataaggtaaattctagccattaagttaactgac 92  Q
    |||||| ||||||||||||| |||||||| |||||||||| |||||    
T  1297925 acttattcaccttataaggtgaattctagtcattaagttacctgac 1297970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 47017999 - 47017938
Alignment:
Q  17 agggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    |||| ||||| ||||||| || ||||| | |||||| ||||||||||||| |||||||||||    
T  47017999 aggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 47017938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 3442890 - 3442942
Alignment:
Q  22 ccgggattcgaactccagacacacaacttatccaccttataaggtaaattcta 74  Q
    ||||| ||||||| |||||||| | |||||| ||||||||||||| |||||||    
T  3442890 ccggggttcgaaccccagacaccccacttattcaccttataaggtgaattcta 3442942  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 6365398 - 6365430
Alignment:
Q  49 ttatccaccttataaggtaaattctagccatta 81  Q
    |||| ||||||||||||||||||||||||||||    
T  6365398 ttattcaccttataaggtaaattctagccatta 6365430  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 14010819 - 14010749
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactgaca 93  Q
    |||| ||||||| || ||||| | |||||| ||||||||||||||||||||||||| |||| || ||||||    
T  14010819 cggggttcgaaccccggacaccccacttattcaccttataaggtaaattctagccactaagctatctgaca 14010749  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 9524999 - 9525059
Alignment:
Q  17 agggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcc 77  Q
    |||| ||||| ||||||| |||||||| | |||||| ||||||||||||| ||||||||||    
T  9524999 aggggccggggttcgaaccccagacaccctacttattcaccttataaggtgaattctagcc 9525059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 24608536 - 24608476
Alignment:
Q  17 agggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcc 77  Q
    |||| ||||| ||||||| |||||||| | |||||| ||||||||||||| ||||||||||    
T  24608536 aggggccggggttcgaaccccagacaccctacttattcaccttataaggtgaattctagcc 24608476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 43468752 - 43468697
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    |||| |||||||||| ||||| | |||||| ||||||||||||| |||||||||||    
T  43468752 cggggttcgaactccggacaccccacttattcaccttataaggtgaattctagcca 43468697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 3379671 - 3379625
Alignment:
Q  47 acttatccaccttataaggtaaattctagccattaagttaactgaca 93  Q
    |||||| ||||||||||||| |||||||||||||||| || ||||||    
T  3379671 acttattcaccttataaggtgaattctagccattaagctacctgaca 3379625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 10184843 - 10184790
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    |||||||||| ||||| | | |||| ||||||||||||| ||||||||||||||    
T  10184843 ttcgaactccggacactccatttattcaccttataaggtgaattctagccatta 10184790  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 2366405 - 2366463
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    |||| ||||||||| |||||| | |||||| ||||||||||||| ||||||||||||||    
T  2366405 cggggttcgaactctagacaccccacttattcaccttataaggtgaattctagccatta 2366463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 30644222 - 30644272
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    ||||||| |||||||| | |||||| ||||||||||||| |||||||||||    
T  30644222 ttcgaaccccagacaccccacttattcaccttataaggtgaattctagcca 30644272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 21086157 - 21086210
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    |||||||||| ||||| |||||||| ||||||||||| | |||| |||||||||    
T  21086157 ttcgaactccggacacccaacttattcaccttataagatgaattttagccatta 21086210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 21285406 - 21285345
Alignment:
Q  17 agggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    |||| ||||| ||||||| || ||||| | |||||| ||||||||||||| |||||||||||    
T  21285406 aggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 21285345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 29658325 - 29658264
Alignment:
Q  17 agggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    |||| ||||| ||||||| || ||||| | |||||| ||||||||||||| |||||||||||    
T  29658325 aggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 29658264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 47552260 - 47552316
Alignment:
Q  22 ccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    ||||| ||||||| || ||||| | |||||| ||||||||||||| |||||||||||    
T  47552260 ccggggttcgaaccccggacaccctacttattcaccttataaggtgaattctagcca 47552316  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 43774233 - 43774303
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactgaca 93  Q
    |||| ||||||| |||||||| | |||||| ||||||||||||| ||||||||||| || |||| ||||||    
T  43774233 cggggttcgaaccccagacaccccacttattcaccttataaggtgaattctagccactaggttacctgaca 43774303  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 42271066 - 42271007
Alignment:
Q  17 agggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagc 76  Q
    |||| ||||| |||||||||| ||||| | |||||| ||||||||||||| |||||||||    
T  42271066 aggggccggggttcgaactccggacaccctacttattcaccttataaggtgaattctagc 42271007  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 32508817 - 32508771
Alignment:
Q  47 acttatccaccttataaggtaaattctagccattaagttaactgaca 93  Q
    |||||| ||||||||||||| ||||||||||| ||||||| ||||||    
T  32508817 acttattcaccttataaggtgaattctagccactaagttacctgaca 32508771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 50144660 - 50144602
Alignment:
Q  16 tagggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattcta 74  Q
    ||||||||||| ||||||| || ||||| | |||||| ||||||||||||| |||||||    
T  50144660 tagggaccggggttcgaaccccggacactccacttattcaccttataaggtgaattcta 50144602  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 35477784 - 35477837
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    |||||||||| ||||| | |||||| ||||||||||||| |||||||| |||||    
T  35477784 ttcgaactccggacaccccacttattcaccttataaggtgaattctagtcatta 35477837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 46328977 - 46328916
Alignment:
Q  17 agggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    |||| ||||| ||||||| || ||||| | |||||| ||||||||||||| |||||||||||    
T  46328977 aggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 46328916  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 14417921 - 14417985
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactgac 92  Q
    ||||||| || ||||| | |||||| ||||||||||||| ||||||||||| |||| || |||||    
T  14417921 ttcgaaccccggacaccccacttattcaccttataaggtgaattctagccactaagctacctgac 14417985  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 24537869 - 24537929
Alignment:
Q  17 agggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcc 77  Q
    |||| ||||| ||||||| || ||||| | |||||| ||||||||||||| ||||||||||    
T  24537869 aggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcc 24537929  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 1244769 - 1244705
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactgac 92  Q
    ||||||| |||||||| | |||||| ||||||||||||| ||||||||||| || |||| |||||    
T  1244769 ttcgaaccccagacaccccacttattcaccttataaggtgaattctagccactaggttacctgac 1244705  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 29841399 - 29841454
Alignment:
Q  26 gattcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    ||||||||| || ||||| | |||||| | ||||||||||||||||||||||||||    
T  29841399 gattcgaaccccggacaccccacttattccccttataaggtaaattctagccatta 29841454  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 6806687 - 6806629
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    |||||||||||| || ||||| | |||||| ||| ||||||||| ||||||||||||||    
T  6806687 cgggattcgaaccccggacactccacttattcacattataaggtgaattctagccatta 6806629  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 20945944 - 20945883
Alignment:
Q  17 agggaccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    |||| ||||| |||||| ||| ||||| | |||||| ||||||||||||| |||||||||||    
T  20945944 aggggccggggttcgaaatccggacaccccacttattcaccttataaggtgaattctagcca 20945883  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 26169042 - 26169006
Alignment:
Q  42 acacaacttatccaccttataaggtaaattctagcca 78  Q
    |||| |||||| |||||||||||||||||||||||||    
T  26169042 acacgacttattcaccttataaggtaaattctagcca 26169006  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 32711192 - 32711136
Alignment:
Q  22 ccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    ||||| ||||||| |||||||| | |||||| ||||||||||||| |||||||||||    
T  32711192 ccggggttcgaaccccagacaccccacttattcaccttataaggtgaattctagcca 32711136  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 11405504 - 11405574
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactgaca 93  Q
    |||| ||||||| || ||||| | |||||| ||||||||||||| ||||||||||| |||| || ||||||    
T  11405504 cggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagccactaagctacctgaca 11405574  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 15774359 - 15774290
Alignment:
Q  23 cgggattcgaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactgac 92  Q
    |||| ||||||| || ||||| | |||||| ||||||||||||| ||||||||||| |||| || |||||    
T  15774359 cggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagccactaagctacctgac 15774290  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 24168633 - 24168559
Alignment:
Q  16 tagggaccgggattcgaactccagacacacaacttatccacctt----ataaggtaaattctagccattaagtta 86  Q
    ||||||||||| ||||||| |||||||| | |||||| ||||||    | ||||||||||||||||| |||||||    
T  24168633 tagggaccggggttcgaaccccagacaccccacttattcaccttaaaaaaaaggtaaattctagccactaagtta 24168559  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 24636777 - 24636830
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagccatta 81  Q
    |||||||||| |||||   |||||| ||||| ||||||||||||||||||||||    
T  24636777 ttcgaactccggacacctcacttattcacctgataaggtaaattctagccatta 24636830  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 15288997 - 15288947
Alignment:
Q  28 ttcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    |||||||||||||||| | |||||| || |||||||||| |||||||||||    
T  15288997 ttcgaactccagacaccccacttattcatcttataaggtgaattctagcca 15288947  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 18904731 - 18904675
Alignment:
Q  22 ccgggattcgaactccagacacacaacttatccaccttataaggtaaattctagcca 78  Q
    ||||| |||||||||  ||||| | |||||| ||||||||||||| |||||||||||    
T  18904731 ccggggttcgaactctggacaccccacttattcaccttataaggtgaattctagcca 18904675  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 26598639 - 26598571
Alignment:
Q  25 ggattcgaactccagacacacaacttatccaccttataaggtaaattctagccattaagttaactgaca 93  Q
    |||||||||||||| |||| | ||||||  | |||||||||| ||||||||| |||||| || ||||||    
T  26598639 ggattcgaactccaaacactctacttatttatcttataaggtgaattctagctattaagctacctgaca 26598571  T

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