View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15009_low_2 (Length: 454)
Name: NF15009_low_2
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15009_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 31399797 - 31399572
Alignment:
| Q |
28 |
ataattcaaagtctcttattttatacattgattattcaaagacatgatatgtaaaattagaaactttacataattcgtaccaaaaagtttccctcttttg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| ||| |||||||| |
|
|
| T |
31399797 |
ataattcaaagtctcttattttatacattgattattcaaagacatgatatgtaaaactagaaactttacataattcttaccagaaaaattctctcttttg |
31399698 |
T |
|
| Q |
128 |
ctagcagatgatacatctgttgatgttggtgttttccttttcttacgagccaactcttcagcttcttcccttttcttacgagccaacttttcagcttgtt |
227 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31399697 |
ctagcagatgatccatctgttgatgttggtgttttccttttcttacgagccaactcttgagcttcttcccttttcttacgagccaactcttcagcttgtt |
31399598 |
T |
|
| Q |
228 |
ctctacaaatatgcacaagtcatcat |
253 |
Q |
| |
|
||||||||||||||| || ||||||| |
|
|
| T |
31399597 |
ctctacaaatatgcataattcatcat |
31399572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 324 - 448
Target Start/End: Complemental strand, 31399502 - 31399378
Alignment:
| Q |
324 |
ataagaatgagatattcaaatttgagttagttaaacatttctattcaaagttaaaaatttagagtacgtcggggtaatatatgtctttaattcaatcata |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31399502 |
ataagaatgagatattcaaatttgagttagtttaacatttctattcaaagttaaaaatttagagtacgtcggggtaatatatgtctttaattcaatcata |
31399403 |
T |
|
| Q |
424 |
taaaattcaatatatgatgatgtcc |
448 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
31399402 |
taaaattcaatatatgattatgtcc |
31399378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 31400856 - 31400799
Alignment:
| Q |
26 |
atataattcaaagtctcttattttatacattgattattcaaagacatgatatgtaaaa |
83 |
Q |
| |
|
||||| ||||| |||| ||||||||| |||| |||||||||||||| || |||||||| |
|
|
| T |
31400856 |
atatagttcaaggtcttttattttatgcattaattattcaaagacaagacatgtaaaa |
31400799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University