View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15009_low_3 (Length: 442)
Name: NF15009_low_3
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15009_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 25 - 427
Target Start/End: Complemental strand, 44003611 - 44003209
Alignment:
| Q |
25 |
gtatgtctaaagcggtttcaagtatttatggagattgcctcatctggtcttggactttctaaaattaaaatcaattttgatactatacatgttttgttta |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44003611 |
gtatgtctaaagcggtttcaagtatttatggagattgcctcatctggtcttggactttctaaaattaaaatcaattttgatactatacatgttttgttta |
44003512 |
T |
|
| Q |
125 |
cttatgtccaattttgacaagtaggggatgtttgattgtttccacattcattattttcttgaattccatgtcatgatgatattaaccttgaaatttttac |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44003511 |
tttatgtccaattttgacaagtaggggatgtttgattgttcccacatttattattttcttgaattccatgtcatgatgatattaaccttgaaatttttac |
44003412 |
T |
|
| Q |
225 |
atttgtttcgttaacatttgttaaccttcttaaatctgtacataatttgttatctagtgtttttaactactctatcgagaggtaaacaataacagaaact |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44003411 |
atttgtttcgttaacatttgttaaccttcttaaatctgtacataatttgttatctagtgtttttaactactctatcgagaggtaaacaataacagaaact |
44003312 |
T |
|
| Q |
325 |
gttagatgcatagctgaatcttaaccaactcttgtacaccaatactattctactaggtttcaactttggtttgtctcttattcttgtctcataaggttga |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44003311 |
gttagatgcatagctgaatcttaaccaactcttgtacaccaatactattctactaggtttcaactttggtttgtctcttattcttgtctcataaggttga |
44003212 |
T |
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| Q |
425 |
tat |
427 |
Q |
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| T |
44003211 |
tat |
44003209 |
T |
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