View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15009_low_7 (Length: 328)
Name: NF15009_low_7
Description: NF15009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15009_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 4495886 - 4495606
Alignment:
| Q |
19 |
agcaatagggtcgttttccctgaagaagggggacctaacaatagggccatcctgtacaatacataaccgaaaagattattataaaatcaaaaactatata |
118 |
Q |
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| T |
4495886 |
agcaatagggtcgttttccctgaagaagggggacctaacaatagggccatcctgtaca-----taaccaaaaagattattataaaatcaaaaactatata |
4495792 |
T |
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| Q |
119 |
ataaattcacctagtatagcctataaaaactttgggaataaattacaatgcattattaaagtaaaattattttactccgacaatcaatcacaactcgcca |
218 |
Q |
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| T |
4495791 |
ataaattcacctagtatagcctataaaaactttgggaataaattacaatgcattattaaagtaaaattattttactccgacaatcaat------------ |
4495704 |
T |
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| Q |
219 |
agataacaaacaattacataattttaatgtgacaaattgaagagttgtgattgaacatcagggtaagattccttaatctaaaaaacttaaggtaaatatt |
318 |
Q |
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| T |
4495703 |
--ataacaaacaattacataattttaatgtgacaaattgaagagttgtgattgaatatcagtgtaagattccttaatctaaaaaacttaaggtaaatatt |
4495606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 44240759 - 44240816
Alignment:
| Q |
179 |
gtaaaattattttactccgacaatcaatcacaactcgccaagataacaaacaattaca |
236 |
Q |
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| T |
44240759 |
gtaaaattattttacaccaacaactaatcacaactcgccaagacaacaaacaattaca |
44240816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 23989598 - 23989649
Alignment:
| Q |
180 |
taaaattattttactccgacaatcaatcacaactcgccaagataacaaacaa |
231 |
Q |
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| T |
23989598 |
taaaattgttttacaccgacaatcaatcacaacttgctaagaaaacaaacaa |
23989649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 42351382 - 42351324
Alignment:
| Q |
179 |
gtaaaattattttactccgacaatcaatcacaactcgccaagataacaaacaattacat |
237 |
Q |
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| T |
42351382 |
gtaaaattgttttaaaccgacaatcaatcataacttgctaagacaacaaacaattacat |
42351324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 43464963 - 43465012
Alignment:
| Q |
22 |
aatagggtcgttttccctgaagaagggggacctaacaatagggccatcct |
71 |
Q |
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| T |
43464963 |
aatagggtcgttttccctgaagaaggaggtcctagcaaaagggtcatcct |
43465012 |
T |
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